miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 3' -53.6 NC_001806.1 + 147105 0.83 0.246637
Target:  5'- cCCgCGGCCCAGAAGCaGCgcggGGGCCGa -3'
miRNA:   3'- -GG-GCUGGGUCUUUGaUGaua-CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 143107 0.75 0.611015
Target:  5'- aCCCGACgCUGGggGCgugGCUGccgggagGGGCCGc -3'
miRNA:   3'- -GGGCUG-GGUCuuUGa--UGAUa------CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 59251 0.75 0.611015
Target:  5'- aCCGAgCCAGAAACUACggcaGGCCc -3'
miRNA:   3'- gGGCUgGGUCUUUGAUGauacCCGGc -5'
5995 3' -53.6 NC_001806.1 + 47833 0.74 0.641909
Target:  5'- uUuuGACCCGcGAGAUc-CUAUGGGCCGc -3'
miRNA:   3'- -GggCUGGGU-CUUUGauGAUACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 151286 0.73 0.68295
Target:  5'- gCCGggGCCgGGggGCggcgGCgGUGGGCCGg -3'
miRNA:   3'- gGGC--UGGgUCuuUGa---UGaUACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 30840 0.73 0.693126
Target:  5'- cCUCGGCCCccgcGCUGCUucUGGGCCGc -3'
miRNA:   3'- -GGGCUGGGucuuUGAUGAu-ACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 7794 0.73 0.70325
Target:  5'- cCCCGGCUaCAGggGCcAUguUGGGCCGc -3'
miRNA:   3'- -GGGCUGG-GUCuuUGaUGauACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 27335 0.73 0.712311
Target:  5'- gCCCGGCCCauugggcGGGAGUUACcgcccaAUGGGCCGg -3'
miRNA:   3'- -GGGCUGGG-------UCUUUGAUGa-----UACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 67503 0.73 0.713314
Target:  5'- uCCCGACCCccugGGGAGCcc---UGGGCCGu -3'
miRNA:   3'- -GGGCUGGG----UCUUUGaugauACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 46103 0.73 0.723308
Target:  5'- gUCCGGCCCGGGGcCUGCgcgGGcGCCu -3'
miRNA:   3'- -GGGCUGGGUCUUuGAUGauaCC-CGGc -5'
5995 3' -53.6 NC_001806.1 + 150600 0.73 0.723308
Target:  5'- gCCCGGCCCAuuGGGCgguaACUcccgcccaAUGGGCCGg -3'
miRNA:   3'- -GGGCUGGGUc-UUUGa---UGA--------UACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 24696 0.72 0.743048
Target:  5'- gCCCGGCCCGGugGCgc----GGGCCGc -3'
miRNA:   3'- -GGGCUGGGUCuuUGaugauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 18437 0.72 0.743048
Target:  5'- aCCCGcCCCAGAAuCgg--AUGGGCCc -3'
miRNA:   3'- -GGGCuGGGUCUUuGaugaUACCCGGc -5'
5995 3' -53.6 NC_001806.1 + 4174 0.72 0.771897
Target:  5'- aCCCGcCCCGGggGCgggggcccgGCgccGGGCCa -3'
miRNA:   3'- -GGGCuGGGUCuuUGa--------UGauaCCCGGc -5'
5995 3' -53.6 NC_001806.1 + 135062 0.72 0.771897
Target:  5'- aCCGGCCCcgcGGGGAC-GCgccGGGCCGg -3'
miRNA:   3'- gGGCUGGG---UCUUUGaUGauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 126092 0.72 0.781273
Target:  5'- -aCGGCCC-GAAgccugcuguuucGCUACUgcGUGGGCCGc -3'
miRNA:   3'- ggGCUGGGuCUU------------UGAUGA--UACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 84422 0.71 0.789596
Target:  5'- cCCCGagacgcaGCCCGGGGACgg----GGGCCGg -3'
miRNA:   3'- -GGGC-------UGGGUCUUUGaugauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 125603 0.71 0.790514
Target:  5'- uCCCGAcucCCCGGAccuuGACU-CUAUGuGGUCGg -3'
miRNA:   3'- -GGGCU---GGGUCU----UUGAuGAUAC-CCGGC- -5'
5995 3' -53.6 NC_001806.1 + 96769 0.71 0.790514
Target:  5'- gCCCGACCCGGcccgagggucaGAACUACacggaGGGCUc -3'
miRNA:   3'- -GGGCUGGGUC-----------UUUGAUGaua--CCCGGc -5'
5995 3' -53.6 NC_001806.1 + 4450 0.71 0.808553
Target:  5'- gUCCG-CCCGGggGCUGCc--GGcGCCGc -3'
miRNA:   3'- -GGGCuGGGUCuuUGAUGauaCC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.