miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 3' -53.6 NC_001806.1 + 3340 0.71 0.825943
Target:  5'- cUCCGGCCgCGGggG--GCUGgcGGGCCGg -3'
miRNA:   3'- -GGGCUGG-GUCuuUgaUGAUa-CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 4174 0.72 0.771897
Target:  5'- aCCCGcCCCGGggGCgggggcccgGCgccGGGCCa -3'
miRNA:   3'- -GGGCuGGGUCuuUGa--------UGauaCCCGGc -5'
5995 3' -53.6 NC_001806.1 + 4277 0.7 0.866165
Target:  5'- gCUCGACCCGccGggGCUGCcc--GGCCGu -3'
miRNA:   3'- -GGGCUGGGU--CuuUGAUGauacCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 4450 0.71 0.808553
Target:  5'- gUCCG-CCCGGggGCUGCc--GGcGCCGc -3'
miRNA:   3'- -GGGCuGGGUCuuUGAUGauaCC-CGGC- -5'
5995 3' -53.6 NC_001806.1 + 4637 0.67 0.94006
Target:  5'- aCCGGCCguGAcGACgucuccgcgGCggcUGGGCCGg -3'
miRNA:   3'- gGGCUGGguCU-UUGa--------UGau-ACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 6812 0.67 0.949031
Target:  5'- -aCGACCCGGAGcguccccuGCUGCgcucucccGGGCUGc -3'
miRNA:   3'- ggGCUGGGUCUU--------UGAUGaua-----CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 7794 0.73 0.70325
Target:  5'- cCCCGGCUaCAGggGCcAUguUGGGCCGc -3'
miRNA:   3'- -GGGCUGG-GUCuuUGaUGauACCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 9607 0.67 0.949031
Target:  5'- gUCGGCCaCGcGAAugUAC-GUGGGCCc -3'
miRNA:   3'- gGGCUGG-GU-CUUugAUGaUACCCGGc -5'
5995 3' -53.6 NC_001806.1 + 12060 0.66 0.970434
Target:  5'- uCUgGACCCGcaaAAGCgGCUGUuGGGCCa -3'
miRNA:   3'- -GGgCUGGGUc--UUUGaUGAUA-CCCGGc -5'
5995 3' -53.6 NC_001806.1 + 15846 0.66 0.970434
Target:  5'- aCgGGCCCcuuuuGggGCcGCgggGGGCCGa -3'
miRNA:   3'- gGgCUGGGu----CuuUGaUGauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 18437 0.72 0.743048
Target:  5'- aCCCGcCCCAGAAuCgg--AUGGGCCc -3'
miRNA:   3'- -GGGCuGGGUCUUuGaugaUACCCGGc -5'
5995 3' -53.6 NC_001806.1 + 21174 0.7 0.84262
Target:  5'- cCCCGAgCCCAGAccgcGACgaGCgggGGGCCc -3'
miRNA:   3'- -GGGCU-GGGUCU----UUGa-UGauaCCCGGc -5'
5995 3' -53.6 NC_001806.1 + 21513 0.66 0.970434
Target:  5'- cCCCGGCCCGGGGccGCgaACgg-GaGGCCc -3'
miRNA:   3'- -GGGCUGGGUCUU--UGa-UGauaC-CCGGc -5'
5995 3' -53.6 NC_001806.1 + 23876 0.68 0.93013
Target:  5'- cCCCGACCCcGAgGACgUGCgcgugGUGGuGCUGu -3'
miRNA:   3'- -GGGCUGGGuCU-UUG-AUGa----UACC-CGGC- -5'
5995 3' -53.6 NC_001806.1 + 24005 0.67 0.94006
Target:  5'- -gCGGCCCuGGccAACcgGCUGUgcGGGCCGg -3'
miRNA:   3'- ggGCUGGGuCU--UUGa-UGAUA--CCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 24696 0.72 0.743048
Target:  5'- gCCCGGCCCGGugGCgc----GGGCCGc -3'
miRNA:   3'- -GGGCUGGGUCuuUGaugauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 24863 0.66 0.970434
Target:  5'- aCCGugCUGGcgGCgGCgg-GGGCCGu -3'
miRNA:   3'- gGGCugGGUCuuUGaUGauaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 25507 0.67 0.947746
Target:  5'- cCCCGagggagcgcgggacGCgCCGGGGAggGCUG-GGGCCGg -3'
miRNA:   3'- -GGGC--------------UG-GGUCUUUgaUGAUaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 25554 0.67 0.957062
Target:  5'- gCUgGGgCCGGGGAggGCUG-GGGCCGg -3'
miRNA:   3'- -GGgCUgGGUCUUUgaUGAUaCCCGGC- -5'
5995 3' -53.6 NC_001806.1 + 25586 0.67 0.957062
Target:  5'- gCUgGGgCCGGGGAggGCUG-GGGCCGg -3'
miRNA:   3'- -GGgCUgGGUCUUUgaUGAUaCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.