Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 147205 | 0.68 | 0.58174 |
Target: 5'- cGCGGCCCCggcgGCGgaagaggcggccCCCG-CGgGGGUc -3' miRNA: 3'- aCGCCGGGGaa--UGU------------GGGCaGCaCCCA- -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 137826 | 0.7 | 0.476802 |
Target: 5'- cGCGGCCCgCcUGCgGCCCGUguuggugugUGUGGGc -3' miRNA: 3'- aCGCCGGG-GaAUG-UGGGCA---------GCACCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 134251 | 0.72 | 0.37413 |
Target: 5'- gGCGGCCCCggcaGCcggaaugaggaGCUCGUCG-GGGUg -3' miRNA: 3'- aCGCCGGGGaa--UG-----------UGGGCAGCaCCCA- -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 133744 | 0.7 | 0.476802 |
Target: 5'- cGCGGCCCCUugUGCuCCCcccCGUGGa- -3' miRNA: 3'- aCGCCGGGGA--AUGuGGGca-GCACCca -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 133411 | 0.69 | 0.542726 |
Target: 5'- cGCGGgCCCgcgUACACCaCGgCGgcagGGGUc -3' miRNA: 3'- aCGCCgGGGa--AUGUGG-GCaGCa---CCCA- -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 132664 | 0.74 | 0.294088 |
Target: 5'- cGCGGCCgCUUACGCCgCGcUCcUGGGg -3' miRNA: 3'- aCGCCGGgGAAUGUGG-GC-AGcACCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 120865 | 0.68 | 0.562141 |
Target: 5'- gGCGGCCCCUgGCGCCgccugGUCccccgGGGa -3' miRNA: 3'- aCGCCGGGGAaUGUGGg----CAGca---CCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 119625 | 0.67 | 0.660969 |
Target: 5'- uUGUGGCCCCa-GCGCCCcaCGggcccgGGGg -3' miRNA: 3'- -ACGCCGGGGaaUGUGGGcaGCa-----CCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 109431 | 0.69 | 0.542726 |
Target: 5'- gGCGGCCCgUgauaaccACAUCCGUgCGcGGGUu -3' miRNA: 3'- aCGCCGGGgAa------UGUGGGCA-GCaCCCA- -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 109063 | 0.75 | 0.244705 |
Target: 5'- cGCGGCCCCgauaaACGCCCG-CG-GGGc -3' miRNA: 3'- aCGCCGGGGaa---UGUGGGCaGCaCCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 95430 | 0.67 | 0.641145 |
Target: 5'- cGCGGgCCCgggggGCagggGCCCGagaCGUGGGg -3' miRNA: 3'- aCGCCgGGGaa---UG----UGGGCa--GCACCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 91179 | 0.67 | 0.621295 |
Target: 5'- cGCGGCCCgCgccaACgCCGUCG-GGGc -3' miRNA: 3'- aCGCCGGG-GaaugUG-GGCAGCaCCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 90239 | 0.66 | 0.699317 |
Target: 5'- aGCGGCgauuccgacgucgCCgUgGCGCCCcugGUCGUGGGc -3' miRNA: 3'- aCGCCG-------------GGgAaUGUGGG---CAGCACCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 88678 | 0.69 | 0.5331 |
Target: 5'- cGCGGCCa--UGCGCUCGcagagaucUCGUGGGg -3' miRNA: 3'- aCGCCGGggaAUGUGGGC--------AGCACCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 88070 | 0.66 | 0.690521 |
Target: 5'- gGCaGGCCCCUgGCcgccaGCUCGUUcagGUGGGa -3' miRNA: 3'- aCG-CCGGGGAaUG-----UGGGCAG---CACCCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 86330 | 0.66 | 0.709039 |
Target: 5'- gGaCGGCCCCgaACGCCUGcagucccUCGggcagGGGUc -3' miRNA: 3'- aC-GCCGGGGaaUGUGGGC-------AGCa----CCCA- -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 78925 | 0.73 | 0.307589 |
Target: 5'- aGCGGCCCCUcGCccgggGCCCGcCGUGucuGGUg -3' miRNA: 3'- aCGCCGGGGAaUG-----UGGGCaGCAC---CCA- -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 78675 | 0.67 | 0.670852 |
Target: 5'- gGCGGCagugcUCCUgggcGCGCCCGUCGUcGuGGc -3' miRNA: 3'- aCGCCG-----GGGAa---UGUGGGCAGCA-C-CCa -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 77398 | 0.66 | 0.729245 |
Target: 5'- gGCGGCCgCgcccGCGCCCcugcUCGUGGa- -3' miRNA: 3'- aCGCCGGgGaa--UGUGGGc---AGCACCca -5' |
|||||||
5995 | 5' | -60.6 | NC_001806.1 | + | 75684 | 0.66 | 0.715808 |
Target: 5'- gGCGGCCCagcGCGCCCGcaguagccacgagCGcUGGGc -3' miRNA: 3'- aCGCCGGGgaaUGUGGGCa------------GC-ACCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home