miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 5' -60.6 NC_001806.1 + 2452 0.75 0.25048
Target:  5'- gGCGGCCCCcgGCGgcCCCGUgG-GGGUg -3'
miRNA:   3'- aCGCCGGGGaaUGU--GGGCAgCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 4736 0.68 0.591593
Target:  5'- cGCGGCCCCggGCcgggGCCCgGUCGccGGc -3'
miRNA:   3'- aCGCCGGGGaaUG----UGGG-CAGCacCCa -5'
5995 5' -60.6 NC_001806.1 + 6069 0.67 0.641145
Target:  5'- cGcCGGCCCCggggGCggGCCCGggCGgcgGGGg -3'
miRNA:   3'- aC-GCCGGGGaa--UG--UGGGCa-GCa--CCCa -5'
5995 5' -60.6 NC_001806.1 + 9730 0.69 0.532141
Target:  5'- gGCGGCCCCcaucacCGCCCcuaaccgcagggcGcCGUGGGUu -3'
miRNA:   3'- aCGCCGGGGaau---GUGGG-------------CaGCACCCA- -5'
5995 5' -60.6 NC_001806.1 + 20353 0.66 0.700291
Target:  5'- gGCGGCCCUUgggcCGCCCGcCGUcccguuGGUc -3'
miRNA:   3'- aCGCCGGGGAau--GUGGGCaGCAc-----CCA- -5'
5995 5' -60.6 NC_001806.1 + 26686 0.73 0.335997
Target:  5'- -cCGGCCCCcacCGCCCGgCGUGGGc -3'
miRNA:   3'- acGCCGGGGaauGUGGGCaGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 28504 0.66 0.699317
Target:  5'- -aUGGCCCCUUugacucagacgcaGgGCCCGgggucgcCGUGGGa -3'
miRNA:   3'- acGCCGGGGAA-------------UgUGGGCa------GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 31284 0.71 0.432229
Target:  5'- cUGCGGUCUCg-GCACCCGUgGUccGGGg -3'
miRNA:   3'- -ACGCCGGGGaaUGUGGGCAgCA--CCCa -5'
5995 5' -60.6 NC_001806.1 + 32967 0.67 0.660969
Target:  5'- cGgGGCCCCUUGgGUCCGcCG-GGGc -3'
miRNA:   3'- aCgCCGGGGAAUgUGGGCaGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 34831 0.71 0.415092
Target:  5'- cGCGGCCCCUcccggcagccACGCCCccagCGUcGGGUg -3'
miRNA:   3'- aCGCCGGGGAa---------UGUGGGca--GCA-CCCA- -5'
5995 5' -60.6 NC_001806.1 + 38207 0.67 0.660969
Target:  5'- uUGgGGCCCUgc-CGCuCCGUCGgacgaggcgucUGGGUg -3'
miRNA:   3'- -ACgCCGGGGaauGUG-GGCAGC-----------ACCCA- -5'
5995 5' -60.6 NC_001806.1 + 38638 0.67 0.670852
Target:  5'- gGUGGUggaugUCCUUAUACCCGUgGUgccGGGg -3'
miRNA:   3'- aCGCCG-----GGGAAUGUGGGCAgCA---CCCa -5'
5995 5' -60.6 NC_001806.1 + 50070 0.67 0.670852
Target:  5'- cGCGaGCCUCacggcgUUGCGuCCCGUCG-GGGc -3'
miRNA:   3'- aCGC-CGGGG------AAUGU-GGGCAGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 50482 0.7 0.476802
Target:  5'- cGCGcccuGCCCCUgggaaGCCCcgcgGUCGUGGGg -3'
miRNA:   3'- aCGC----CGGGGAaug--UGGG----CAGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 55266 0.66 0.700291
Target:  5'- gGcCGGCCCCcucCGCCCagagcaCGUGGGg -3'
miRNA:   3'- aC-GCCGGGGaauGUGGGca----GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 57880 0.67 0.640153
Target:  5'- cGCGccauccucGCCCCccgaGCGCCCccgcuugGUCGUGGGa -3'
miRNA:   3'- aCGC--------CGGGGaa--UGUGGG-------CAGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 58540 0.69 0.504613
Target:  5'- cUGCGGCCUCgucagGCGCaacugaaCGUCGgGGGUu -3'
miRNA:   3'- -ACGCCGGGGaa---UGUGg------GCAGCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 69595 0.66 0.700291
Target:  5'- gGCGGCUCUgcgagGCggucgGCCUGUCGgGGGg -3'
miRNA:   3'- aCGCCGGGGaa---UG-----UGGGCAGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 70256 0.73 0.327998
Target:  5'- cUGCGGCCCCUgguccagcUGCAgccccccccgcccCCCGagGUGGGc -3'
miRNA:   3'- -ACGCCGGGGA--------AUGU-------------GGGCagCACCCa -5'
5995 5' -60.6 NC_001806.1 + 75684 0.66 0.715808
Target:  5'- gGCGGCCCagcGCGCCCGcaguagccacgagCGcUGGGc -3'
miRNA:   3'- aCGCCGGGgaaUGUGGGCa------------GC-ACCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.