miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 5' -60.6 NC_001806.1 + 77398 0.66 0.729245
Target:  5'- gGCGGCCgCgcccGCGCCCcugcUCGUGGa- -3'
miRNA:   3'- aCGCCGGgGaa--UGUGGGc---AGCACCca -5'
5995 5' -60.6 NC_001806.1 + 78675 0.67 0.670852
Target:  5'- gGCGGCagugcUCCUgggcGCGCCCGUCGUcGuGGc -3'
miRNA:   3'- aCGCCG-----GGGAa---UGUGGGCAGCA-C-CCa -5'
5995 5' -60.6 NC_001806.1 + 78925 0.73 0.307589
Target:  5'- aGCGGCCCCUcGCccgggGCCCGcCGUGucuGGUg -3'
miRNA:   3'- aCGCCGGGGAaUG-----UGGGCaGCAC---CCA- -5'
5995 5' -60.6 NC_001806.1 + 86330 0.66 0.709039
Target:  5'- gGaCGGCCCCgaACGCCUGcagucccUCGggcagGGGUc -3'
miRNA:   3'- aC-GCCGGGGaaUGUGGGC-------AGCa----CCCA- -5'
5995 5' -60.6 NC_001806.1 + 88070 0.66 0.690521
Target:  5'- gGCaGGCCCCUgGCcgccaGCUCGUUcagGUGGGa -3'
miRNA:   3'- aCG-CCGGGGAaUG-----UGGGCAG---CACCCa -5'
5995 5' -60.6 NC_001806.1 + 88678 0.69 0.5331
Target:  5'- cGCGGCCa--UGCGCUCGcagagaucUCGUGGGg -3'
miRNA:   3'- aCGCCGGggaAUGUGGGC--------AGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 90239 0.66 0.699317
Target:  5'- aGCGGCgauuccgacgucgCCgUgGCGCCCcugGUCGUGGGc -3'
miRNA:   3'- aCGCCG-------------GGgAaUGUGGG---CAGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 91179 0.67 0.621295
Target:  5'- cGCGGCCCgCgccaACgCCGUCG-GGGc -3'
miRNA:   3'- aCGCCGGG-GaaugUG-GGCAGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 95430 0.67 0.641145
Target:  5'- cGCGGgCCCgggggGCagggGCCCGagaCGUGGGg -3'
miRNA:   3'- aCGCCgGGGaa---UG----UGGGCa--GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 109063 0.75 0.244705
Target:  5'- cGCGGCCCCgauaaACGCCCG-CG-GGGc -3'
miRNA:   3'- aCGCCGGGGaa---UGUGGGCaGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 109431 0.69 0.542726
Target:  5'- gGCGGCCCgUgauaaccACAUCCGUgCGcGGGUu -3'
miRNA:   3'- aCGCCGGGgAa------UGUGGGCA-GCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 119625 0.67 0.660969
Target:  5'- uUGUGGCCCCa-GCGCCCcaCGggcccgGGGg -3'
miRNA:   3'- -ACGCCGGGGaaUGUGGGcaGCa-----CCCa -5'
5995 5' -60.6 NC_001806.1 + 120865 0.68 0.562141
Target:  5'- gGCGGCCCCUgGCGCCgccugGUCccccgGGGa -3'
miRNA:   3'- aCGCCGGGGAaUGUGGg----CAGca---CCCa -5'
5995 5' -60.6 NC_001806.1 + 132664 0.74 0.294088
Target:  5'- cGCGGCCgCUUACGCCgCGcUCcUGGGg -3'
miRNA:   3'- aCGCCGGgGAAUGUGG-GC-AGcACCCa -5'
5995 5' -60.6 NC_001806.1 + 133411 0.69 0.542726
Target:  5'- cGCGGgCCCgcgUACACCaCGgCGgcagGGGUc -3'
miRNA:   3'- aCGCCgGGGa--AUGUGG-GCaGCa---CCCA- -5'
5995 5' -60.6 NC_001806.1 + 133744 0.7 0.476802
Target:  5'- cGCGGCCCCUugUGCuCCCcccCGUGGa- -3'
miRNA:   3'- aCGCCGGGGA--AUGuGGGca-GCACCca -5'
5995 5' -60.6 NC_001806.1 + 134251 0.72 0.37413
Target:  5'- gGCGGCCCCggcaGCcggaaugaggaGCUCGUCG-GGGUg -3'
miRNA:   3'- aCGCCGGGGaa--UG-----------UGGGCAGCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 137826 0.7 0.476802
Target:  5'- cGCGGCCCgCcUGCgGCCCGUguuggugugUGUGGGc -3'
miRNA:   3'- aCGCCGGG-GaAUG-UGGGCA---------GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 147205 0.68 0.58174
Target:  5'- cGCGGCCCCggcgGCGgaagaggcggccCCCG-CGgGGGUc -3'
miRNA:   3'- aCGCCGGGGaa--UGU------------GGGCaGCaCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.