miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 5' -60.6 NC_001806.1 + 147205 0.68 0.58174
Target:  5'- cGCGGCCCCggcgGCGgaagaggcggccCCCG-CGgGGGUc -3'
miRNA:   3'- aCGCCGGGGaa--UGU------------GGGCaGCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 120865 0.68 0.562141
Target:  5'- gGCGGCCCCUgGCGCCgccugGUCccccgGGGa -3'
miRNA:   3'- aCGCCGGGGAaUGUGGg----CAGca---CCCa -5'
5995 5' -60.6 NC_001806.1 + 133411 0.69 0.542726
Target:  5'- cGCGGgCCCgcgUACACCaCGgCGgcagGGGUc -3'
miRNA:   3'- aCGCCgGGGa--AUGUGG-GCaGCa---CCCA- -5'
5995 5' -60.6 NC_001806.1 + 109431 0.69 0.542726
Target:  5'- gGCGGCCCgUgauaaccACAUCCGUgCGcGGGUu -3'
miRNA:   3'- aCGCCGGGgAa------UGUGGGCA-GCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 88678 0.69 0.5331
Target:  5'- cGCGGCCa--UGCGCUCGcagagaucUCGUGGGg -3'
miRNA:   3'- aCGCCGGggaAUGUGGGC--------AGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 9730 0.69 0.532141
Target:  5'- gGCGGCCCCcaucacCGCCCcuaaccgcagggcGcCGUGGGUu -3'
miRNA:   3'- aCGCCGGGGaau---GUGGG-------------CaGCACCCA- -5'
5995 5' -60.6 NC_001806.1 + 58540 0.69 0.504613
Target:  5'- cUGCGGCCUCgucagGCGCaacugaaCGUCGgGGGUu -3'
miRNA:   3'- -ACGCCGGGGaa---UGUGg------GCAGCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 50482 0.7 0.476802
Target:  5'- cGCGcccuGCCCCUgggaaGCCCcgcgGUCGUGGGg -3'
miRNA:   3'- aCGC----CGGGGAaug--UGGG----CAGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 133744 0.7 0.476802
Target:  5'- cGCGGCCCCUugUGCuCCCcccCGUGGa- -3'
miRNA:   3'- aCGCCGGGGA--AUGuGGGca-GCACCca -5'
5995 5' -60.6 NC_001806.1 + 137826 0.7 0.476802
Target:  5'- cGCGGCCCgCcUGCgGCCCGUguuggugugUGUGGGc -3'
miRNA:   3'- aCGCCGGG-GaAUG-UGGGCA---------GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 31284 0.71 0.432229
Target:  5'- cUGCGGUCUCg-GCACCCGUgGUccGGGg -3'
miRNA:   3'- -ACGCCGGGGaaUGUGGGCAgCA--CCCa -5'
5995 5' -60.6 NC_001806.1 + 34831 0.71 0.415092
Target:  5'- cGCGGCCCCUcccggcagccACGCCCccagCGUcGGGUg -3'
miRNA:   3'- aCGCCGGGGAa---------UGUGGGca--GCA-CCCA- -5'
5995 5' -60.6 NC_001806.1 + 134251 0.72 0.37413
Target:  5'- gGCGGCCCCggcaGCcggaaugaggaGCUCGUCG-GGGUg -3'
miRNA:   3'- aCGCCGGGGaa--UG-----------UGGGCAGCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 26686 0.73 0.335997
Target:  5'- -cCGGCCCCcacCGCCCGgCGUGGGc -3'
miRNA:   3'- acGCCGGGGaauGUGGGCaGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 70256 0.73 0.327998
Target:  5'- cUGCGGCCCCUgguccagcUGCAgccccccccgcccCCCGagGUGGGc -3'
miRNA:   3'- -ACGCCGGGGA--------AUGU-------------GGGCagCACCCa -5'
5995 5' -60.6 NC_001806.1 + 78925 0.73 0.307589
Target:  5'- aGCGGCCCCUcGCccgggGCCCGcCGUGucuGGUg -3'
miRNA:   3'- aCGCCGGGGAaUG-----UGGGCaGCAC---CCA- -5'
5995 5' -60.6 NC_001806.1 + 132664 0.74 0.294088
Target:  5'- cGCGGCCgCUUACGCCgCGcUCcUGGGg -3'
miRNA:   3'- aCGCCGGgGAAUGUGG-GC-AGcACCCa -5'
5995 5' -60.6 NC_001806.1 + 2452 0.75 0.25048
Target:  5'- gGCGGCCCCcgGCGgcCCCGUgG-GGGUg -3'
miRNA:   3'- aCGCCGGGGaaUGU--GGGCAgCaCCCA- -5'
5995 5' -60.6 NC_001806.1 + 109063 0.75 0.244705
Target:  5'- cGCGGCCCCgauaaACGCCCG-CG-GGGc -3'
miRNA:   3'- aCGCCGGGGaa---UGUGGGCaGCaCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.