miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 40559 0.67 0.70408
Target:  5'- -gGGCGgGgCGUgaaaauggaaGCGCCGCGGGUcgGCGu -3'
miRNA:   3'- ggCUGCgCgGCA----------CGCGGCGCUCA--UGC- -5'
5996 5' -60.1 NC_001806.1 + 138773 0.67 0.729678
Target:  5'- gCCGACGCaggcgucgguaaugGCCGacgcagGCGCCcccgGCGAgcGUGCGu -3'
miRNA:   3'- -GGCUGCG--------------CGGCa-----CGCGG----CGCU--CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 140688 0.67 0.732491
Target:  5'- gCGGCGC-CCGcGUGCCGCGcuGGaACGc -3'
miRNA:   3'- gGCUGCGcGGCaCGCGGCGC--UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 21491 0.67 0.732491
Target:  5'- gCCGACGcCGCCGgcgaccggGCcccggcccgggGCCGCGA--ACGg -3'
miRNA:   3'- -GGCUGC-GCGGCa-------CG-----------CGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 5582 0.67 0.751049
Target:  5'- cCCGACGCcggcacGCCGgggGCccgugGCCGCGGcccGUugGu -3'
miRNA:   3'- -GGCUGCG------CGGCa--CG-----CGGCGCU---CAugC- -5'
5996 5' -60.1 NC_001806.1 + 138402 0.67 0.751049
Target:  5'- -gGACGCGgggcaCaUGCGCUGCGAgGUGCa -3'
miRNA:   3'- ggCUGCGCg----GcACGCGGCGCU-CAUGc -5'
5996 5' -60.1 NC_001806.1 + 114624 0.67 0.751049
Target:  5'- uCCGACagccCGUCGUGCagcacguCCGCGAGaGCGc -3'
miRNA:   3'- -GGCUGc---GCGGCACGc------GGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 9753 0.67 0.751049
Target:  5'- aCCGcaGgGCGCCGUGgGuuGgGGGcGCGu -3'
miRNA:   3'- -GGC--UgCGCGGCACgCggCgCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 121846 0.67 0.741813
Target:  5'- cCCGACcaGCGCCGggugGCGCCuGUGuGUc-- -3'
miRNA:   3'- -GGCUG--CGCGGCa---CGCGG-CGCuCAugc -5'
5996 5' -60.1 NC_001806.1 + 4312 0.67 0.741813
Target:  5'- cCCGugGCGUCGcgGCcggccaccGCCGCGcGGgcccgGCGg -3'
miRNA:   3'- -GGCugCGCGGCa-CG--------CGGCGC-UCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 143646 0.67 0.741813
Target:  5'- uCCGGCGCGCCGcccccCGCCGCu------ -3'
miRNA:   3'- -GGCUGCGCGGCac---GCGGCGcucaugc -5'
5996 5' -60.1 NC_001806.1 + 40042 0.67 0.741813
Target:  5'- aUGGCGUGCCG-GCGUCaaugguaaacaGCGuGUGCa -3'
miRNA:   3'- gGCUGCGCGGCaCGCGG-----------CGCuCAUGc -5'
5996 5' -60.1 NC_001806.1 + 24071 0.67 0.741813
Target:  5'- cCCGACGUGUCG-GCGCUggGCGcacAGgGCGu -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGG--CGC---UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 21335 0.67 0.741813
Target:  5'- gCCGGgGaCGCCGUcuCGCCGCGAcaGCu -3'
miRNA:   3'- -GGCUgC-GCGGCAc-GCGGCGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 4072 0.67 0.741813
Target:  5'- aCGGC-CGCCGggGCGCC-CGAGgccuCGa -3'
miRNA:   3'- gGCUGcGCGGCa-CGCGGcGCUCau--GC- -5'
5996 5' -60.1 NC_001806.1 + 146774 0.68 0.684851
Target:  5'- uCCGACGCGg---GgGCCGuCGGGUACu -3'
miRNA:   3'- -GGCUGCGCggcaCgCGGC-GCUCAUGc -5'
5996 5' -60.1 NC_001806.1 + 51025 0.68 0.694489
Target:  5'- gCGGCGgGuCCGUGUuggGcCCGCGGGUccGCGu -3'
miRNA:   3'- gGCUGCgC-GGCACG---C-GGCGCUCA--UGC- -5'
5996 5' -60.1 NC_001806.1 + 76154 0.68 0.694489
Target:  5'- -gGGCGUGCCG-GCcCUGCGccAGUACGu -3'
miRNA:   3'- ggCUGCGCGGCaCGcGGCGC--UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 115237 0.68 0.694489
Target:  5'- -gGACGCGCCGccggggGCGUuuaCGCGGGggACa -3'
miRNA:   3'- ggCUGCGCGGCa-----CGCG---GCGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 119027 0.68 0.684851
Target:  5'- gCCGugGCGgCGcUGCGCCuugcGUGGGgcuCGg -3'
miRNA:   3'- -GGCugCGCgGC-ACGCGG----CGCUCau-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.