miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 2787 0.71 0.474784
Target:  5'- gCGGCG-GCCcgggGCGCCGCGGGcuggGCGg -3'
miRNA:   3'- gGCUGCgCGGca--CGCGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 100876 0.71 0.483803
Target:  5'- gCCGAgGCGCCGcccgaucGCGCacagCGCGAcGUGCGc -3'
miRNA:   3'- -GGCUgCGCGGCa------CGCG----GCGCU-CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 1780 0.7 0.567204
Target:  5'- aCCGGCGUGUccgggccgaagcgCGUGCGCaCGCGGuaGCGc -3'
miRNA:   3'- -GGCUGCGCG-------------GCACGCG-GCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 116149 0.7 0.549004
Target:  5'- cCCGAUGCGgCGgcgcugcaGCGCUGCGAaggGCGg -3'
miRNA:   3'- -GGCUGCGCgGCa-------CGCGGCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 24281 0.7 0.539498
Target:  5'- gCCGugcagUGCGCCGUGCGCuggccggcggCGCGGGaccUGCGc -3'
miRNA:   3'- -GGCu----GCGCGGCACGCG----------GCGCUC---AUGC- -5'
5996 5' -60.1 NC_001806.1 + 95003 0.7 0.568166
Target:  5'- cCUGAcCGCGCUGgcGCGgCGCGAGuUGCa -3'
miRNA:   3'- -GGCU-GCGCGGCa-CGCgGCGCUC-AUGc -5'
5996 5' -60.1 NC_001806.1 + 23011 0.7 0.53855
Target:  5'- gCGACGCGCUGgugcucaUGCGCCugcGCGGGgaccUGCGc -3'
miRNA:   3'- gGCUGCGCGGC-------ACGCGG---CGCUC----AUGC- -5'
5996 5' -60.1 NC_001806.1 + 125836 0.7 0.577812
Target:  5'- cCUGACGCGCCGcgggcccccgGcCGCCGCGG--ACGc -3'
miRNA:   3'- -GGCUGCGCGGCa---------C-GCGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 93979 0.7 0.568166
Target:  5'- uCCGGC-CGCgGUacagaucgGCGCCGCGAG-AUGg -3'
miRNA:   3'- -GGCUGcGCGgCA--------CGCGGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 147495 0.7 0.539498
Target:  5'- -gGGCgGCGCCGgagggggcgGCGCCGCGGGaggGCc -3'
miRNA:   3'- ggCUG-CGCGGCa--------CGCGGCGCUCa--UGc -5'
5996 5' -60.1 NC_001806.1 + 22182 0.7 0.568166
Target:  5'- cCCGGCG-GCCGUguggGCGCC-CGAGcuggGCGa -3'
miRNA:   3'- -GGCUGCgCGGCA----CGCGGcGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 30232 0.7 0.539498
Target:  5'- gCCGugGCcCCGUGCG-UGCGAGcGCc -3'
miRNA:   3'- -GGCugCGcGGCACGCgGCGCUCaUGc -5'
5996 5' -60.1 NC_001806.1 + 144534 0.7 0.539498
Target:  5'- -gGGCGCgGCCGUGcCGaUCGCGGGUgguGCGa -3'
miRNA:   3'- ggCUGCG-CGGCAC-GC-GGCGCUCA---UGC- -5'
5996 5' -60.1 NC_001806.1 + 36189 0.69 0.597202
Target:  5'- uUGACGCGUCGaUGCucuGCCGCGcGgGCGg -3'
miRNA:   3'- gGCUGCGCGGC-ACG---CGGCGCuCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 49203 0.69 0.597202
Target:  5'- aCCuGCGUGCgGUGUuCCGCGGGgaugACGa -3'
miRNA:   3'- -GGcUGCGCGgCACGcGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 112519 0.69 0.587492
Target:  5'- gCCGACGUGCCgGUGaCGUacgGCGAG-AUGg -3'
miRNA:   3'- -GGCUGCGCGG-CAC-GCGg--CGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 26967 0.69 0.586523
Target:  5'- cCUGGCGCGCCGcggcucgUGgGCCcGCGAGcggGCc -3'
miRNA:   3'- -GGCUGCGCGGC-------ACgCGG-CGCUCa--UGc -5'
5996 5' -60.1 NC_001806.1 + 86667 0.69 0.587492
Target:  5'- cCCGGCG-GCCGUGagGCCGCG-GcACa -3'
miRNA:   3'- -GGCUGCgCGGCACg-CGGCGCuCaUGc -5'
5996 5' -60.1 NC_001806.1 + 25922 0.69 0.597202
Target:  5'- gCGGCGUGCgCGcGCGCgGCGGGcguggggGCGg -3'
miRNA:   3'- gGCUGCGCG-GCaCGCGgCGCUCa------UGC- -5'
5996 5' -60.1 NC_001806.1 + 65233 0.69 0.587492
Target:  5'- aCCGcagaGCgGCGCCGUGUGUCGCGAc---- -3'
miRNA:   3'- -GGC----UG-CGCGGCACGCGGCGCUcaugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.