miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 131873 0.73 0.414184
Target:  5'- gUCGugGCgGCCGcccGCGCCGCGAcgACGc -3'
miRNA:   3'- -GGCugCG-CGGCa--CGCGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 130478 0.68 0.694489
Target:  5'- cCCGAgGCGUCGcUGCcggcccagGCCGcCGAG-ACGg -3'
miRNA:   3'- -GGCUgCGCGGC-ACG--------CGGC-GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 125836 0.7 0.577812
Target:  5'- cCUGACGCGCCGcgggcccccgGcCGCCGCGG--ACGc -3'
miRNA:   3'- -GGCUGCGCGGCa---------C-GCGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 122873 0.68 0.675172
Target:  5'- gCCGcCGCGCCacgGCcgagaagaGCgGCGAGUGCu -3'
miRNA:   3'- -GGCuGCGCGGca-CG--------CGgCGCUCAUGc -5'
5996 5' -60.1 NC_001806.1 + 122516 0.66 0.804183
Target:  5'- uCCaGCGUGCCGUacGUccgGCCGUGGGUGg- -3'
miRNA:   3'- -GGcUGCGCGGCA--CG---CGGCGCUCAUgc -5'
5996 5' -60.1 NC_001806.1 + 121846 0.67 0.741813
Target:  5'- cCCGACcaGCGCCGggugGCGCCuGUGuGUc-- -3'
miRNA:   3'- -GGCUG--CGCGGCa---CGCGG-CGCuCAugc -5'
5996 5' -60.1 NC_001806.1 + 121139 0.73 0.40592
Target:  5'- uCUGACGCGCCccaagGCGCUGCGGuUGCc -3'
miRNA:   3'- -GGCUGCGCGGca---CGCGGCGCUcAUGc -5'
5996 5' -60.1 NC_001806.1 + 119027 0.68 0.684851
Target:  5'- gCCGugGCGgCGcUGCGCCuugcGUGGGgcuCGg -3'
miRNA:   3'- -GGCugCGCgGC-ACGCGG----CGCUCau-GC- -5'
5996 5' -60.1 NC_001806.1 + 116149 0.7 0.549004
Target:  5'- cCCGAUGCGgCGgcgcugcaGCGCUGCGAaggGCGg -3'
miRNA:   3'- -GGCUGCGCgGCa-------CGCGGCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 115237 0.68 0.694489
Target:  5'- -gGACGCGCCGccggggGCGUuuaCGCGGGggACa -3'
miRNA:   3'- ggCUGCGCGGCa-----CGCG---GCGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 114624 0.67 0.751049
Target:  5'- uCCGACagccCGUCGUGCagcacguCCGCGAGaGCGc -3'
miRNA:   3'- -GGCUGc---GCGGCACGc------GGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 112519 0.69 0.587492
Target:  5'- gCCGACGUGCCgGUGaCGUacgGCGAG-AUGg -3'
miRNA:   3'- -GGCUGCGCGG-CAC-GCGg--CGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 108933 0.68 0.655726
Target:  5'- -gGACGUacagGCCGUgGCGCUGUGuGUACc -3'
miRNA:   3'- ggCUGCG----CGGCA-CGCGGCGCuCAUGc -5'
5996 5' -60.1 NC_001806.1 + 106546 0.66 0.769226
Target:  5'- gCGAugcCGCGCUgGUGCGCgCGCGc-UACGg -3'
miRNA:   3'- gGCU---GCGCGG-CACGCG-GCGCucAUGC- -5'
5996 5' -60.1 NC_001806.1 + 102832 0.66 0.760189
Target:  5'- cCCGACGaGCCGgucGCcCCGCGGcccgcGUACa -3'
miRNA:   3'- -GGCUGCgCGGCa--CGcGGCGCU-----CAUGc -5'
5996 5' -60.1 NC_001806.1 + 100876 0.71 0.483803
Target:  5'- gCCGAgGCGCCGcccgaucGCGCacagCGCGAcGUGCGc -3'
miRNA:   3'- -GGCUgCGCGGCa------CGCG----GCGCU-CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 99944 0.75 0.295101
Target:  5'- aUGGCGgGCCGcGCGCCGgGAGU-CGa -3'
miRNA:   3'- gGCUGCgCGGCaCGCGGCgCUCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 98241 0.68 0.654752
Target:  5'- gCUGACGCgcgaugcgaucgaGCCGUGCaCCGUGGG-ACa -3'
miRNA:   3'- -GGCUGCG-------------CGGCACGcGGCGCUCaUGc -5'
5996 5' -60.1 NC_001806.1 + 96621 0.68 0.645974
Target:  5'- gCCGgcgacaACGCGaCCGU-CGCCGCGGGccACGc -3'
miRNA:   3'- -GGC------UGCGC-GGCAcGCGGCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 95658 0.69 0.616686
Target:  5'- gCGGCGCGCgCGcgcuucUGCGCCcugacgGCGGGcGCGg -3'
miRNA:   3'- gGCUGCGCG-GC------ACGCGG------CGCUCaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.