miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 24404 0.82 0.119437
Target:  5'- cCCGACGCGCCGccgcugcgccUGUGCCGCGGcggcaacGUGCGc -3'
miRNA:   3'- -GGCUGCGCGGC----------ACGCGGCGCU-------CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 22962 0.77 0.246325
Target:  5'- gCCGACGCGCCccgccUGCGCgcguggcugCGCGAGcUGCGg -3'
miRNA:   3'- -GGCUGCGCGGc----ACGCG---------GCGCUC-AUGC- -5'
5996 5' -60.1 NC_001806.1 + 22640 0.76 0.269826
Target:  5'- gCGAgCGCGCgGUGC-CCGCcGGGUACGg -3'
miRNA:   3'- gGCU-GCGCGgCACGcGGCG-CUCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 26803 0.76 0.275977
Target:  5'- cCUGGCGCGCC-UGCGCCuGCGAcGcGCGg -3'
miRNA:   3'- -GGCUGCGCGGcACGCGG-CGCU-CaUGC- -5'
5996 5' -60.1 NC_001806.1 + 22766 0.76 0.275977
Target:  5'- aCGACGaCGCCGgGCGCCGCGcccAGgcCGg -3'
miRNA:   3'- gGCUGC-GCGGCaCGCGGCGC---UCauGC- -5'
5996 5' -60.1 NC_001806.1 + 23073 0.75 0.295101
Target:  5'- gCCGugGcCGCCGUgcGCGCCGUGAGc--- -3'
miRNA:   3'- -GGCugC-GCGGCA--CGCGGCGCUCaugc -5'
5996 5' -60.1 NC_001806.1 + 99944 0.75 0.295101
Target:  5'- aUGGCGgGCCGcGCGCCGgGAGU-CGa -3'
miRNA:   3'- gGCUGCgCGGCaCGCGGCgCUCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 1678 0.75 0.308414
Target:  5'- uCCGGCGCGCCGgGCGCCaugGCGucGGUGg- -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGG---CGC--UCAUgc -5'
5996 5' -60.1 NC_001806.1 + 35558 0.75 0.308414
Target:  5'- cUCGGCGCGcCCG-GCGCCGCGccgaacgacGUGCGc -3'
miRNA:   3'- -GGCUGCGC-GGCaCGCGGCGCu--------CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 42612 0.73 0.387312
Target:  5'- -gGACGCGCCcugaucauacUGCGCCGCGgcggcgucgcguccGGUGCGg -3'
miRNA:   3'- ggCUGCGCGGc---------ACGCGGCGC--------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 41426 0.73 0.39776
Target:  5'- cCCaGCGCGCCGUG-GUCG-GGGUGCGc -3'
miRNA:   3'- -GGcUGCGCGGCACgCGGCgCUCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 121139 0.73 0.40592
Target:  5'- uCUGACGCGCCccaagGCGCUGCGGuUGCc -3'
miRNA:   3'- -GGCUGCGCGGca---CGCGGCGCUcAUGc -5'
5996 5' -60.1 NC_001806.1 + 131873 0.73 0.414184
Target:  5'- gUCGugGCgGCCGcccGCGCCGCGAcgACGc -3'
miRNA:   3'- -GGCugCG-CGGCa--CGCGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 20665 0.72 0.421709
Target:  5'- cCCGGCGUGCCG-GCGUCGgGGcggggucGUGCa -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGGCgCU-------CAUGc -5'
5996 5' -60.1 NC_001806.1 + 50579 0.72 0.422551
Target:  5'- aCGcCGUGCUGgGCGCUGCGGuGUACGc -3'
miRNA:   3'- gGCuGCGCGGCaCGCGGCGCU-CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 29948 0.72 0.439584
Target:  5'- cCCGccaguCGCgaGCCGcgGCGCCGCGGGggGCGu -3'
miRNA:   3'- -GGCu----GCG--CGGCa-CGCGGCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 23241 0.72 0.443037
Target:  5'- gCCGACGCGCUGgcggccgccgccgccUccgccGCGCCGCGGGagggGCGc -3'
miRNA:   3'- -GGCUGCGCGGC---------------A-----CGCGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 24640 0.72 0.448246
Target:  5'- -gGGCGCGCCGcUGCgGCC-CGuGUACGu -3'
miRNA:   3'- ggCUGCGCGGC-ACG-CGGcGCuCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 25823 0.72 0.465849
Target:  5'- gUGACGUGCggaGUGCGCCGUGcucuGUugGu -3'
miRNA:   3'- gGCUGCGCGg--CACGCGGCGCu---CAugC- -5'
5996 5' -60.1 NC_001806.1 + 34318 0.72 0.465849
Target:  5'- gCGGCGCGCCGgacgggGCGCUG-GAGauaACGg -3'
miRNA:   3'- gGCUGCGCGGCa-----CGCGGCgCUCa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.