miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 356 0.66 0.795638
Target:  5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3'
miRNA:   3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 1616 0.67 0.723089
Target:  5'- gCGGCGCGCCcaggccccagcGcGCGCagGCGGcGUGCGa -3'
miRNA:   3'- gGCUGCGCGG-----------CaCGCGg-CGCU-CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 1678 0.75 0.308414
Target:  5'- uCCGGCGCGCCGgGCGCCaugGCGucGGUGg- -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGG---CGC--UCAUgc -5'
5996 5' -60.1 NC_001806.1 + 1780 0.7 0.567204
Target:  5'- aCCGGCGUGUccgggccgaagcgCGUGCGCaCGCGGuaGCGc -3'
miRNA:   3'- -GGCUGCGCG-------------GCACGCG-GCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 2504 0.66 0.786958
Target:  5'- gCCGcACGCgGCC-UGgGCgGCGGGgGCGg -3'
miRNA:   3'- -GGC-UGCG-CGGcACgCGgCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 2787 0.71 0.474784
Target:  5'- gCGGCG-GCCcgggGCGCCGCGGGcuggGCGg -3'
miRNA:   3'- gGCUGCgCGGca--CGCGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 3487 0.68 0.675172
Target:  5'- cCCGGCGuCGUCGUcggcgucgGCGUgGCGGGcgGCGu -3'
miRNA:   3'- -GGCUGC-GCGGCA--------CGCGgCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 3604 0.66 0.795638
Target:  5'- cCCGGCGgGCacCGcGCGCuCGCccGGUGCGg -3'
miRNA:   3'- -GGCUGCgCG--GCaCGCG-GCGc-UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 4072 0.67 0.741813
Target:  5'- aCGGC-CGCCGggGCGCC-CGAGgccuCGa -3'
miRNA:   3'- gGCUGcGCGGCa-CGCGGcGCUCau--GC- -5'
5996 5' -60.1 NC_001806.1 + 4312 0.67 0.741813
Target:  5'- cCCGugGCGUCGcgGCcggccaccGCCGCGcGGgcccgGCGg -3'
miRNA:   3'- -GGCugCGCGGCa-CG--------CGGCGC-UCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 4445 0.67 0.712666
Target:  5'- gCGGCGUccgcccgggggcuGCCG-GCGCCGCGcucgACGg -3'
miRNA:   3'- gGCUGCG-------------CGGCaCGCGGCGCuca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 4491 0.66 0.795638
Target:  5'- cCCGACG-GCCc-GCGCCuCGcGUGCGu -3'
miRNA:   3'- -GGCUGCgCGGcaCGCGGcGCuCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 4661 0.66 0.769226
Target:  5'- gCGGCuGgGCCGgcggGCGCgGCGAcagGCGg -3'
miRNA:   3'- gGCUG-CgCGGCa---CGCGgCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 4693 0.67 0.70408
Target:  5'- uCCGugGgGuCCGgauacGCGCCGCGua-GCGg -3'
miRNA:   3'- -GGCugCgC-GGCa----CGCGGCGCucaUGC- -5'
5996 5' -60.1 NC_001806.1 + 4938 0.66 0.769226
Target:  5'- gCCGGCGU-CgGUGCccGCCGCGGGgGCc -3'
miRNA:   3'- -GGCUGCGcGgCACG--CGGCGCUCaUGc -5'
5996 5' -60.1 NC_001806.1 + 5361 0.68 0.684851
Target:  5'- aUCGGCGUcCCG-GCGCgGCGAGcgucugACGg -3'
miRNA:   3'- -GGCUGCGcGGCaCGCGgCGCUCa-----UGC- -5'
5996 5' -60.1 NC_001806.1 + 5582 0.67 0.751049
Target:  5'- cCCGACGCcggcacGCCGgggGCccgugGCCGCGGcccGUugGu -3'
miRNA:   3'- -GGCUGCG------CGGCa--CG-----CGGCGCU---CAugC- -5'
5996 5' -60.1 NC_001806.1 + 6138 0.66 0.760189
Target:  5'- aCCGACGC-CCGcagacgGCGCCGgccacgaacgaCGGGaGCGg -3'
miRNA:   3'- -GGCUGCGcGGCa-----CGCGGC-----------GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 9753 0.67 0.751049
Target:  5'- aCCGcaGgGCGCCGUGgGuuGgGGGcGCGu -3'
miRNA:   3'- -GGC--UgCGCGGCACgCggCgCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 9857 0.68 0.665462
Target:  5'- aCCG-CGUuCCGguacUGCGCCGCG-GUGCu -3'
miRNA:   3'- -GGCuGCGcGGC----ACGCGGCGCuCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.