miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 76270 0.66 0.775486
Target:  5'- gCGugGCGCUGgaccugGCcgccGCCGCGgaggagauauccgcGGUGCGc -3'
miRNA:   3'- gGCugCGCGGCa-----CG----CGGCGC--------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 63802 0.66 0.774595
Target:  5'- uCgGACGCGCgcucucuuuguUGUGCGCCgccaccaGCGAGUcaaggaccuugaggGCGg -3'
miRNA:   3'- -GgCUGCGCG-----------GCACGCGG-------CGCUCA--------------UGC- -5'
5996 5' -60.1 NC_001806.1 + 132170 0.66 0.769226
Target:  5'- cCCGACGCGCgGcugGCGUgggCGCGccugGCGg -3'
miRNA:   3'- -GGCUGCGCGgCa--CGCG---GCGCuca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 106546 0.66 0.769226
Target:  5'- gCGAugcCGCGCUgGUGCGCgCGCGc-UACGg -3'
miRNA:   3'- gGCU---GCGCGG-CACGCG-GCGCucAUGC- -5'
5996 5' -60.1 NC_001806.1 + 4938 0.66 0.769226
Target:  5'- gCCGGCGU-CgGUGCccGCCGCGGGgGCc -3'
miRNA:   3'- -GGCUGCGcGgCACG--CGGCGCUCaUGc -5'
5996 5' -60.1 NC_001806.1 + 4661 0.66 0.769226
Target:  5'- gCGGCuGgGCCGgcggGCGCgGCGAcagGCGg -3'
miRNA:   3'- gGCUG-CgCGGCa---CGCGgCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 19985 0.66 0.766526
Target:  5'- uCCGAUGCgaucccgaucccgaGCCGggGCGUCGCGA-UGCc -3'
miRNA:   3'- -GGCUGCG--------------CGGCa-CGCGGCGCUcAUGc -5'
5996 5' -60.1 NC_001806.1 + 102832 0.66 0.760189
Target:  5'- cCCGACGaGCCGgucGCcCCGCGGcccgcGUACa -3'
miRNA:   3'- -GGCUGCgCGGCa--CGcGGCGCU-----CAUGc -5'
5996 5' -60.1 NC_001806.1 + 86305 0.66 0.760189
Target:  5'- gUGAUGCGCCGauggGCGUCuaCGAGgACGg -3'
miRNA:   3'- gGCUGCGCGGCa---CGCGGc-GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 6138 0.66 0.760189
Target:  5'- aCCGACGC-CCGcagacgGCGCCGgccacgaacgaCGGGaGCGg -3'
miRNA:   3'- -GGCUGCGcGGCa-----CGCGGC-----------GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 9753 0.67 0.751049
Target:  5'- aCCGcaGgGCGCCGUGgGuuGgGGGcGCGu -3'
miRNA:   3'- -GGC--UgCGCGGCACgCggCgCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 114624 0.67 0.751049
Target:  5'- uCCGACagccCGUCGUGCagcacguCCGCGAGaGCGc -3'
miRNA:   3'- -GGCUGc---GCGGCACGc------GGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 138402 0.67 0.751049
Target:  5'- -gGACGCGgggcaCaUGCGCUGCGAgGUGCa -3'
miRNA:   3'- ggCUGCGCg----GcACGCGGCGCU-CAUGc -5'
5996 5' -60.1 NC_001806.1 + 5582 0.67 0.751049
Target:  5'- cCCGACGCcggcacGCCGgggGCccgugGCCGCGGcccGUugGu -3'
miRNA:   3'- -GGCUGCG------CGGCa--CG-----CGGCGCU---CAugC- -5'
5996 5' -60.1 NC_001806.1 + 4312 0.67 0.741813
Target:  5'- cCCGugGCGUCGcgGCcggccaccGCCGCGcGGgcccgGCGg -3'
miRNA:   3'- -GGCugCGCGGCa-CG--------CGGCGC-UCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 143646 0.67 0.741813
Target:  5'- uCCGGCGCGCCGcccccCGCCGCu------ -3'
miRNA:   3'- -GGCUGCGCGGCac---GCGGCGcucaugc -5'
5996 5' -60.1 NC_001806.1 + 40042 0.67 0.741813
Target:  5'- aUGGCGUGCCG-GCGUCaaugguaaacaGCGuGUGCa -3'
miRNA:   3'- gGCUGCGCGGCaCGCGG-----------CGCuCAUGc -5'
5996 5' -60.1 NC_001806.1 + 24071 0.67 0.741813
Target:  5'- cCCGACGUGUCG-GCGCUggGCGcacAGgGCGu -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGG--CGC---UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 21335 0.67 0.741813
Target:  5'- gCCGGgGaCGCCGUcuCGCCGCGAcaGCu -3'
miRNA:   3'- -GGCUgC-GCGGCAc-GCGGCGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 4072 0.67 0.741813
Target:  5'- aCGGC-CGCCGggGCGCC-CGAGgccuCGa -3'
miRNA:   3'- gGCUGcGCGGCa-CGCGGcGCUCau--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.