miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 3' -60.1 NC_001806.1 + 107302 0.67 0.685101
Target:  5'- gACCACCCCGgucguCCACCgGgCGCUa--- -3'
miRNA:   3'- -UGGUGGGGCau---GGUGGgC-GUGGguuc -5'
5997 3' -60.1 NC_001806.1 + 974 0.67 0.685101
Target:  5'- cCCGCCCCucGCCcccuCCCGCcCCCGc- -3'
miRNA:   3'- uGGUGGGGcaUGGu---GGGCGuGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 9096 0.67 0.685101
Target:  5'- aGCC-CCCCGgaGCCACCgaGCGgCCAGc -3'
miRNA:   3'- -UGGuGGGGCa-UGGUGGg-CGUgGGUUc -5'
5997 3' -60.1 NC_001806.1 + 23398 0.67 0.685101
Target:  5'- cCCuCCCCG---CGCCCGCGCCCc-- -3'
miRNA:   3'- uGGuGGGGCaugGUGGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 116428 0.67 0.685101
Target:  5'- gACCccaucaGCCUCGUcCCGCCCGUGuuCGAGg -3'
miRNA:   3'- -UGG------UGGGGCAuGGUGGGCGUggGUUC- -5'
5997 3' -60.1 NC_001806.1 + 49366 0.67 0.684117
Target:  5'- -gCGCCCCGgGCCcgaugcgGCCCGUAgCCAGu -3'
miRNA:   3'- ugGUGGGGCaUGG-------UGGGCGUgGGUUc -5'
5997 3' -60.1 NC_001806.1 + 13018 0.67 0.675243
Target:  5'- gGCCuugGgCCCGUGCCACCCgGCGaucUUCAAGc -3'
miRNA:   3'- -UGG---UgGGGCAUGGUGGG-CGU---GGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 30459 0.67 0.675243
Target:  5'- cGCCGCCCCcuccggcGCCGCCCcGCuCCCc-- -3'
miRNA:   3'- -UGGUGGGGca-----UGGUGGG-CGuGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 22928 0.67 0.675243
Target:  5'- gACCcgcggGCCCCGcuuccccGCCGCgCCGCACgCCGAc -3'
miRNA:   3'- -UGG-----UGGGGCa------UGGUG-GGCGUG-GGUUc -5'
5997 3' -60.1 NC_001806.1 + 129656 0.67 0.675243
Target:  5'- gGCUGCCCUGcgcCCGCCCGgGCcgCCGAGc -3'
miRNA:   3'- -UGGUGGGGCau-GGUGGGCgUG--GGUUC- -5'
5997 3' -60.1 NC_001806.1 + 85729 0.67 0.675243
Target:  5'- nACCGCCCCGaACCcugcgguccggaGCCgCGCGgCCAc- -3'
miRNA:   3'- -UGGUGGGGCaUGG------------UGG-GCGUgGGUuc -5'
5997 3' -60.1 NC_001806.1 + 9742 0.67 0.675243
Target:  5'- cACCGCCCCuaACCGCaggGCGCCguGGg -3'
miRNA:   3'- -UGGUGGGGcaUGGUGgg-CGUGGguUC- -5'
5997 3' -60.1 NC_001806.1 + 22099 0.67 0.674255
Target:  5'- gGCgGCCUgGgcgacaGCCGCCCgggccucugggggGCGCCCGAGg -3'
miRNA:   3'- -UGgUGGGgCa-----UGGUGGG-------------CGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 53253 0.67 0.665352
Target:  5'- cCC-CCCCGgGCCGCaCCGgGCCCc-- -3'
miRNA:   3'- uGGuGGGGCaUGGUG-GGCgUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 86899 0.67 0.665352
Target:  5'- -gCACuCCCGUGa-ACCCGUACaCCGAGu -3'
miRNA:   3'- ugGUG-GGGCAUggUGGGCGUG-GGUUC- -5'
5997 3' -60.1 NC_001806.1 + 27858 0.67 0.665352
Target:  5'- gGCCGCCCCGcgguggGCCugCCuCcCCUggGa -3'
miRNA:   3'- -UGGUGGGGCa-----UGGugGGcGuGGGuuC- -5'
5997 3' -60.1 NC_001806.1 + 34672 0.67 0.665352
Target:  5'- cACCACCaCCGacACCuCCCGCGCaCCc-- -3'
miRNA:   3'- -UGGUGG-GGCa-UGGuGGGCGUG-GGuuc -5'
5997 3' -60.1 NC_001806.1 + 60609 0.67 0.662379
Target:  5'- gGCCACCCCGgccccaggucguccuCCucggagauacucACCC-CGCCCGAGc -3'
miRNA:   3'- -UGGUGGGGCau-------------GG------------UGGGcGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 79967 0.67 0.655435
Target:  5'- cGCCGCCCCccGCUAaccucggguCCCGCGccaacccccCCCAGGg -3'
miRNA:   3'- -UGGUGGGGcaUGGU---------GGGCGU---------GGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 66745 0.67 0.655435
Target:  5'- cGCCGCgCCCGgGCCcCCCaGC-CCCAGc -3'
miRNA:   3'- -UGGUG-GGGCaUGGuGGG-CGuGGGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.