miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 3' -60.1 NC_001806.1 + 810 0.66 0.714394
Target:  5'- aACC-CUCCGggGgCGCCCGCGCaCCAc- -3'
miRNA:   3'- -UGGuGGGGCa-UgGUGGGCGUG-GGUuc -5'
5997 3' -60.1 NC_001806.1 + 24446 0.66 0.714394
Target:  5'- cGCUACCgCGUGCgCACgCGCuucgGCCCGGa -3'
miRNA:   3'- -UGGUGGgGCAUG-GUGgGCG----UGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 56581 0.66 0.714394
Target:  5'- cCCGCCCCcagaaaggugACCACggGCACCCAGa -3'
miRNA:   3'- uGGUGGGGca--------UGGUGggCGUGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 59853 0.66 0.714394
Target:  5'- gGCCAUCCUGgcCCGCaCGacgGCCCAGGc -3'
miRNA:   3'- -UGGUGGGGCauGGUGgGCg--UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 79622 0.66 0.714394
Target:  5'- cACCGCCCCccGCCccCCCGCcuccuCCCGc- -3'
miRNA:   3'- -UGGUGGGGcaUGGu-GGGCGu----GGGUuc -5'
5997 3' -60.1 NC_001806.1 + 84561 0.66 0.714394
Target:  5'- gGCCAuCCCCccGCCACCCau-CCCGAc -3'
miRNA:   3'- -UGGU-GGGGcaUGGUGGGcguGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 100544 0.66 0.714394
Target:  5'- --gGCCCCGUucuuaUACCCGCGCgCCGGc -3'
miRNA:   3'- uggUGGGGCAug---GUGGGCGUG-GGUUc -5'
5997 3' -60.1 NC_001806.1 + 23421 0.67 0.704685
Target:  5'- uCCAcgcCCCCGggGCCcgaGCCCGCccccGCCCAGc -3'
miRNA:   3'- uGGU---GGGGCa-UGG---UGGGCG----UGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 147551 0.67 0.704685
Target:  5'- nGCCcCCCCGagccgcgcGCCACCgucgcaCGCGCCCGGc -3'
miRNA:   3'- -UGGuGGGGCa-------UGGUGG------GCGUGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 148833 0.67 0.704685
Target:  5'- gACCGCCCCc--CCAUCCaCGCCCu-- -3'
miRNA:   3'- -UGGUGGGGcauGGUGGGcGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 51810 0.67 0.704685
Target:  5'- cGCCGCCaCCGUgGCCgGCCUGCgcgacGCCCu-- -3'
miRNA:   3'- -UGGUGG-GGCA-UGG-UGGGCG-----UGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 97804 0.67 0.704685
Target:  5'- cCCACgCCCccGCCGCCCGgGgCCAGc -3'
miRNA:   3'- uGGUG-GGGcaUGGUGGGCgUgGGUUc -5'
5997 3' -60.1 NC_001806.1 + 81915 0.67 0.694918
Target:  5'- gGCCACCCCcagcccgGCCucggcCCCGUAcgccuCCCGGGa -3'
miRNA:   3'- -UGGUGGGGca-----UGGu----GGGCGU-----GGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 88783 0.67 0.694918
Target:  5'- gGCCACCCgGUgGCCuuCCGgagucagGCCCAGGa -3'
miRNA:   3'- -UGGUGGGgCA-UGGugGGCg------UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 96128 0.67 0.694918
Target:  5'- cGCCGCCCgGacugcaGCCGCCCGaccuCCgAAGg -3'
miRNA:   3'- -UGGUGGGgCa-----UGGUGGGCgu--GGgUUC- -5'
5997 3' -60.1 NC_001806.1 + 128816 0.67 0.694918
Target:  5'- gACCACaaaCGUcGCCACCUGCACacaCCAGa -3'
miRNA:   3'- -UGGUGgg-GCA-UGGUGGGCGUG---GGUUc -5'
5997 3' -60.1 NC_001806.1 + 49272 0.67 0.694918
Target:  5'- aGCCGCCCgUGcGCCgucgacgggaagGCCCGCgaGCCCGAc -3'
miRNA:   3'- -UGGUGGG-GCaUGG------------UGGGCG--UGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 21251 0.67 0.693938
Target:  5'- cACgACCCCG-ACCACCCccacgaccucgacGaCGCCCGGc -3'
miRNA:   3'- -UGgUGGGGCaUGGUGGG-------------C-GUGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 152061 0.67 0.691978
Target:  5'- cGCCGCCCgccuuuuuugcgcgCGcGCgCGCCCGCgggggGCCCGGGc -3'
miRNA:   3'- -UGGUGGG--------------GCaUG-GUGGGCG-----UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 351 0.67 0.691978
Target:  5'- cGCCGCCCgccuuuuuugcgcgCGcGCgCGCCCGCgggggGCCCGGGc -3'
miRNA:   3'- -UGGUGGG--------------GCaUG-GUGGGCG-----UGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.