miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 3' -60.1 NC_001806.1 + 41069 0.66 0.733605
Target:  5'- aACCAguCCCCGUcgucgucguuGCCGagUCCGCugCCGGa -3'
miRNA:   3'- -UGGU--GGGGCA----------UGGU--GGGCGugGGUUc -5'
5997 3' -60.1 NC_001806.1 + 9655 0.66 0.733605
Target:  5'- aACCGCCCgCcagGCaCGCCUGCGCCaaCAGGu -3'
miRNA:   3'- -UGGUGGG-Gca-UG-GUGGGCGUGG--GUUC- -5'
5997 3' -60.1 NC_001806.1 + 27460 0.66 0.733605
Target:  5'- gGCgGCCCCG-GCCGCCCuu-CCCGc- -3'
miRNA:   3'- -UGgUGGGGCaUGGUGGGcguGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 37929 0.66 0.733605
Target:  5'- cGCCgggGCCguCCGU-CCAcCCCGC-CCCGGGg -3'
miRNA:   3'- -UGG---UGG--GGCAuGGU-GGGCGuGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 43776 0.66 0.733605
Target:  5'- cGCCGcCCCCGgagguuacgcUGgCGCCUGCcGCCCGAa -3'
miRNA:   3'- -UGGU-GGGGC----------AUgGUGGGCG-UGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 57770 0.66 0.733605
Target:  5'- cGCCGUCCCGU-CCG-CCGCAUCgGAGu -3'
miRNA:   3'- -UGGUGGGGCAuGGUgGGCGUGGgUUC- -5'
5997 3' -60.1 NC_001806.1 + 106220 0.66 0.733605
Target:  5'- aGCCGCCuCCGUguuGCUgcguuCCCGgGCCUggGu -3'
miRNA:   3'- -UGGUGG-GGCA---UGGu----GGGCgUGGGuuC- -5'
5997 3' -60.1 NC_001806.1 + 121740 0.66 0.733605
Target:  5'- gGCCAUCCCGUGgauacgucacCCugCUGCagGCCCc-- -3'
miRNA:   3'- -UGGUGGGGCAU----------GGugGGCG--UGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 123929 0.66 0.733605
Target:  5'- gGCCAaaCUGaACCGCCCGC-CCCu-- -3'
miRNA:   3'- -UGGUggGGCaUGGUGGGCGuGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 131561 0.66 0.733605
Target:  5'- cCCcCCCCGUcACCGguuUCCGCgACCCAc- -3'
miRNA:   3'- uGGuGGGGCA-UGGU---GGGCG-UGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 22178 0.66 0.724037
Target:  5'- -gCGCCCCG-GCgGCCguguggGCGCCCGAGc -3'
miRNA:   3'- ugGUGGGGCaUGgUGGg-----CGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 24794 0.66 0.724037
Target:  5'- gACgGCCCgGgggcccUGCCGCCgGCgccGCCCGGGa -3'
miRNA:   3'- -UGgUGGGgC------AUGGUGGgCG---UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 30285 0.66 0.724037
Target:  5'- nGCC-CCCgGggcggagccgGCCGCCCGC-CCCGc- -3'
miRNA:   3'- -UGGuGGGgCa---------UGGUGGGCGuGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 56156 0.66 0.724037
Target:  5'- aAUCGCCCg--ACCGCCCGCccguugACCCcGGa -3'
miRNA:   3'- -UGGUGGGgcaUGGUGGGCG------UGGGuUC- -5'
5997 3' -60.1 NC_001806.1 + 82528 0.66 0.724037
Target:  5'- gGCUugCCCaGUcCCGCCaugGCGCCCGc- -3'
miRNA:   3'- -UGGugGGG-CAuGGUGGg--CGUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 96829 0.66 0.724037
Target:  5'- cAUCGCCCCGUacaaguucaagGCCACCaUGUACUacaAAGa -3'
miRNA:   3'- -UGGUGGGGCA-----------UGGUGG-GCGUGGg--UUC- -5'
5997 3' -60.1 NC_001806.1 + 31106 0.66 0.724037
Target:  5'- gGCCGcgguCCCCGgcuggaGCCG-CCGCACCCu-- -3'
miRNA:   3'- -UGGU----GGGGCa-----UGGUgGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 23714 0.66 0.723076
Target:  5'- cGCCGCgCgGUgcGCCggGCCCGCccccgccGCCCAGGc -3'
miRNA:   3'- -UGGUGgGgCA--UGG--UGGGCG-------UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 84561 0.66 0.714394
Target:  5'- gGCCAuCCCCccGCCACCCau-CCCGAc -3'
miRNA:   3'- -UGGU-GGGGcaUGGUGGGcguGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 79622 0.66 0.714394
Target:  5'- cACCGCCCCccGCCccCCCGCcuccuCCCGc- -3'
miRNA:   3'- -UGGUGGGGcaUGGu-GGGCGu----GGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.