miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 3' -60.1 NC_001806.1 + 22732 0.73 0.369222
Target:  5'- gACgACCCCGacGCCGCCCGcCACgCCGAc -3'
miRNA:   3'- -UGgUGGGGCa-UGGUGGGC-GUG-GGUUc -5'
5997 3' -60.1 NC_001806.1 + 144955 0.72 0.393311
Target:  5'- gGCCGgcCCCCGUgGCgGCCCG-GCCCGGGg -3'
miRNA:   3'- -UGGU--GGGGCA-UGgUGGGCgUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 96757 0.72 0.393311
Target:  5'- aGCCGCgCCGcUGCCcgACCCG-GCCCGAGg -3'
miRNA:   3'- -UGGUGgGGC-AUGG--UGGGCgUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 5850 0.72 0.401563
Target:  5'- gGCC-CCCCGgucCCGCCCGCcggACgCCGGGa -3'
miRNA:   3'- -UGGuGGGGCau-GGUGGGCG---UG-GGUUC- -5'
5997 3' -60.1 NC_001806.1 + 77964 0.72 0.401563
Target:  5'- gGCgGCCCCGgggccGCCGCUCGgACCCcAGa -3'
miRNA:   3'- -UGgUGGGGCa----UGGUGGGCgUGGGuUC- -5'
5997 3' -60.1 NC_001806.1 + 12600 0.72 0.409926
Target:  5'- cCCaACCCCGcagACCugaccccCCCGCACCCAu- -3'
miRNA:   3'- uGG-UGGGGCa--UGGu------GGGCGUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 29762 0.72 0.418396
Target:  5'- cCCGCCCCccGCCGgacgcCCCGCGCCCc-- -3'
miRNA:   3'- uGGUGGGGcaUGGU-----GGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 118765 0.72 0.418396
Target:  5'- gGCCGCCCUGaugcgcgGCCGCCCcGgACUCGGGa -3'
miRNA:   3'- -UGGUGGGGCa------UGGUGGG-CgUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 21429 0.72 0.418396
Target:  5'- cGCCGCCCCGgACC-CCCGCcuUUCGAGc -3'
miRNA:   3'- -UGGUGGGGCaUGGuGGGCGu-GGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 77433 0.71 0.426971
Target:  5'- -gCGCCCUaga-CGCCCGCGCCCGGGc -3'
miRNA:   3'- ugGUGGGGcaugGUGGGCGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 67843 0.71 0.426971
Target:  5'- gGCCGCCCCGcagAaaGUCCGCACCCAc- -3'
miRNA:   3'- -UGGUGGGGCa--UggUGGGCGUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 3983 0.71 0.426971
Target:  5'- aGCCACCCCagGCC-UCCGCGUCCGGGg -3'
miRNA:   3'- -UGGUGGGGcaUGGuGGGCGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 112893 0.71 0.43565
Target:  5'- cCCGCCCCcgGCCACCCGgAUCCc-- -3'
miRNA:   3'- uGGUGGGGcaUGGUGGGCgUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 43162 0.71 0.43565
Target:  5'- cCUGCCCCaUugCGuCCgCGCGCCCAAGg -3'
miRNA:   3'- uGGUGGGGcAugGU-GG-GCGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 32305 0.71 0.43565
Target:  5'- gAUCACCCCGgucCC-CCgGCACCCGc- -3'
miRNA:   3'- -UGGUGGGGCau-GGuGGgCGUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 55881 0.71 0.444429
Target:  5'- cCCGCCCCGgGCCauGCCCGaCGCCUc-- -3'
miRNA:   3'- uGGUGGGGCaUGG--UGGGC-GUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 111923 0.71 0.444429
Target:  5'- aGCCGCugauugCCCGcgACgGCCCGCACCCc-- -3'
miRNA:   3'- -UGGUG------GGGCa-UGgUGGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 45758 0.71 0.444429
Target:  5'- cACCACCCCc-GCCGUCCGaACCCAGGc -3'
miRNA:   3'- -UGGUGGGGcaUGGUGGGCgUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 26509 0.71 0.453307
Target:  5'- gGCCGCCCCGccGCCGCCCcccgccgguggGCcCCCGc- -3'
miRNA:   3'- -UGGUGGGGCa-UGGUGGG-----------CGuGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 47661 0.71 0.462281
Target:  5'- uGCUcgGCCCUGUACCgguACCUGCGCgCCAGc -3'
miRNA:   3'- -UGG--UGGGGCAUGG---UGGGCGUG-GGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.