miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 3' -60.1 NC_001806.1 + 26408 0.82 0.096402
Target:  5'- cGCCGCCCCcgGCCGCCCGgGCCCAc- -3'
miRNA:   3'- -UGGUGGGGcaUGGUGGGCgUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 20158 0.78 0.167866
Target:  5'- cCCGCCCCccGCCGCCCGgGCCCGc- -3'
miRNA:   3'- uGGUGGGGcaUGGUGGGCgUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 21816 0.78 0.173745
Target:  5'- cGCCGCCCCcgcccggGCCACCCccccucuccgaggccGCGCCCAAGc -3'
miRNA:   3'- -UGGUGGGGca-----UGGUGGG---------------CGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 96524 0.77 0.18971
Target:  5'- uGCCACUCCGgcGCCGCCCGC-CCCuGGc -3'
miRNA:   3'- -UGGUGGGGCa-UGGUGGGCGuGGGuUC- -5'
5997 3' -60.1 NC_001806.1 + 30254 0.75 0.258418
Target:  5'- cGCCGCCuCCGgggcccgGCC-CCCGCGCCCcGGc -3'
miRNA:   3'- -UGGUGG-GGCa------UGGuGGGCGUGGGuUC- -5'
5997 3' -60.1 NC_001806.1 + 140167 0.75 0.276918
Target:  5'- uCCACCCCcgacaACCGCCUGC-CCCGGGa -3'
miRNA:   3'- uGGUGGGGca---UGGUGGGCGuGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 39653 0.75 0.276918
Target:  5'- aACCACCCUacgACCACCagaCGCACCCGu- -3'
miRNA:   3'- -UGGUGGGGca-UGGUGG---GCGUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 4154 0.74 0.296459
Target:  5'- cGCCcagGCCgCCGUACagCACCCGC-CCCGGGg -3'
miRNA:   3'- -UGG---UGG-GGCAUG--GUGGGCGuGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 23471 0.74 0.296459
Target:  5'- gGCCGCCgCGgcgcaggcCCGCCCGCGCCCc-- -3'
miRNA:   3'- -UGGUGGgGCau------GGUGGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 150927 0.74 0.296459
Target:  5'- gACCGCCUCGgccuccGCCACCCGgCGCCgGAa -3'
miRNA:   3'- -UGGUGGGGCa-----UGGUGGGC-GUGGgUUc -5'
5997 3' -60.1 NC_001806.1 + 49010 0.74 0.303207
Target:  5'- cACCuACCCCGgccuCCAUCCGCGCUguGGg -3'
miRNA:   3'- -UGG-UGGGGCau--GGUGGGCGUGGguUC- -5'
5997 3' -60.1 NC_001806.1 + 46220 0.74 0.310072
Target:  5'- cGCgGCCCCGgcggcggagACCACCCGCggcaggaaaucgGCCCAGc -3'
miRNA:   3'- -UGgUGGGGCa--------UGGUGGGCG------------UGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 69824 0.74 0.317055
Target:  5'- cACCACCCCG-GCCACgCCGCugUCc-- -3'
miRNA:   3'- -UGGUGGGGCaUGGUG-GGCGugGGuuc -5'
5997 3' -60.1 NC_001806.1 + 120017 0.74 0.317055
Target:  5'- --uGCCCCuGcGCCACCCGCGCCCc-- -3'
miRNA:   3'- uggUGGGG-CaUGGUGGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 28131 0.73 0.346164
Target:  5'- cCCGCCCCGgagcgAgUACCCGCcgGCCUGAGg -3'
miRNA:   3'- uGGUGGGGCa----UgGUGGGCG--UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 143653 0.73 0.346164
Target:  5'- cGCCGCCCCccGCCGcuaaaccccauCCCGCcCCCGGGa -3'
miRNA:   3'- -UGGUGGGGcaUGGU-----------GGGCGuGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 136637 0.73 0.353734
Target:  5'- gGCCACCCCGgcgaUAUCCGCcuCCCGGGc -3'
miRNA:   3'- -UGGUGGGGCaug-GUGGGCGu-GGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 30176 0.73 0.353734
Target:  5'- cCCGCCCCGgGCCcCCCGCGUCCGc- -3'
miRNA:   3'- uGGUGGGGCaUGGuGGGCGUGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 114182 0.73 0.366869
Target:  5'- aGCgACCCCGUgacggaccccgcgcACCcCCUGCACCCGGc -3'
miRNA:   3'- -UGgUGGGGCA--------------UGGuGGGCGUGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 22732 0.73 0.369222
Target:  5'- gACgACCCCGacGCCGCCCGcCACgCCGAc -3'
miRNA:   3'- -UGgUGGGGCa-UGGUGGGC-GUG-GGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.