miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 3' -60.1 NC_001806.1 + 4 0.68 0.635557
Target:  5'- cGCCGCCaCCGcuuuaaaggGCCGCgCGCGaccCCCGGGg -3'
miRNA:   3'- -UGGUGG-GGCa--------UGGUGgGCGU---GGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 351 0.67 0.691978
Target:  5'- cGCCGCCCgccuuuuuugcgcgCGcGCgCGCCCGCgggggGCCCGGGc -3'
miRNA:   3'- -UGGUGGG--------------GCaUG-GUGGGCG-----UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 810 0.66 0.714394
Target:  5'- aACC-CUCCGggGgCGCCCGCGCaCCAc- -3'
miRNA:   3'- -UGGuGGGGCa-UgGUGGGCGUG-GGUuc -5'
5997 3' -60.1 NC_001806.1 + 837 0.68 0.62561
Target:  5'- cACCGCCCCucGCCcccuCCCGC-CCCu-- -3'
miRNA:   3'- -UGGUGGGGcaUGGu---GGGCGuGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 974 0.67 0.685101
Target:  5'- cCCGCCCCucGCCcccuCCCGCcCCCGc- -3'
miRNA:   3'- uGGUGGGGcaUGGu---GGGCGuGGGUuc -5'
5997 3' -60.1 NC_001806.1 + 1241 0.7 0.517945
Target:  5'- cCCGCCCCGUcCCgGCCCguuacaGCACCCc-- -3'
miRNA:   3'- uGGUGGGGCAuGG-UGGG------CGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 1389 0.68 0.615669
Target:  5'- cGCCGCCagcacggugCCGcUGCgGCCCGUGgCCGAGg -3'
miRNA:   3'- -UGGUGG---------GGC-AUGgUGGGCGUgGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 1555 0.68 0.605738
Target:  5'- cGCCACCgggccgggCCGgcgcgcACCGCCuCGCGCCCcAGc -3'
miRNA:   3'- -UGGUGG--------GGCa-----UGGUGG-GCGUGGGuUC- -5'
5997 3' -60.1 NC_001806.1 + 2292 0.69 0.58594
Target:  5'- gACCACUCCG-GCgGCCC-C-CCCGAGg -3'
miRNA:   3'- -UGGUGGGGCaUGgUGGGcGuGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 2689 0.69 0.576085
Target:  5'- gGCUggGCCCCGggggcUGCCGCCgccaGcCGCCCAGGg -3'
miRNA:   3'- -UGG--UGGGGC-----AUGGUGGg---C-GUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 3983 0.71 0.426971
Target:  5'- aGCCACCCCagGCC-UCCGCGUCCGGGg -3'
miRNA:   3'- -UGGUGGGGcaUGGuGGGCGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 4064 0.68 0.605738
Target:  5'- -gCGCCCacacgGCCGCCgggGCGCCCGAGg -3'
miRNA:   3'- ugGUGGGgca--UGGUGGg--CGUGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 4154 0.74 0.296459
Target:  5'- cGCCcagGCCgCCGUACagCACCCGC-CCCGGGg -3'
miRNA:   3'- -UGG---UGG-GGCAUG--GUGGGCGuGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 4361 0.66 0.761776
Target:  5'- uGCgGCCCgCGgagGCCGCggggguccucgCCGCcGCCCGGGg -3'
miRNA:   3'- -UGgUGGG-GCa--UGGUG-----------GGCG-UGGGUUC- -5'
5997 3' -60.1 NC_001806.1 + 4484 0.68 0.635557
Target:  5'- --gACCCCGcccgACgGCCCGCGCCUc-- -3'
miRNA:   3'- uggUGGGGCa---UGgUGGGCGUGGGuuc -5'
5997 3' -60.1 NC_001806.1 + 5577 0.73 0.369222
Target:  5'- cCCGCCCCGa--CGCCgGCACgCCGGGg -3'
miRNA:   3'- uGGUGGGGCaugGUGGgCGUG-GGUUC- -5'
5997 3' -60.1 NC_001806.1 + 5628 0.68 0.62561
Target:  5'- aACCcccgGCCCCGc-CCAUCCGCGCCa--- -3'
miRNA:   3'- -UGG----UGGGGCauGGUGGGCGUGGguuc -5'
5997 3' -60.1 NC_001806.1 + 5694 0.7 0.516994
Target:  5'- cCCGCCCCGcauggcaucucauUACCGCCCG-AUCCGGc -3'
miRNA:   3'- uGGUGGGGC-------------AUGGUGGGCgUGGGUUc -5'
5997 3' -60.1 NC_001806.1 + 5850 0.72 0.401563
Target:  5'- gGCC-CCCCGgucCCGCCCGCcggACgCCGGGa -3'
miRNA:   3'- -UGGuGGGGCau-GGUGGGCG---UG-GGUUC- -5'
5997 3' -60.1 NC_001806.1 + 5919 0.66 0.714394
Target:  5'- uGCCGCCCCcccauugGCCGgcgggcgggaCCGC-CCCAAGg -3'
miRNA:   3'- -UGGUGGGGca-----UGGUg---------GGCGuGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.