miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 3' -59.8 NC_001806.1 + 64953 0.79 0.164123
Target:  5'- aCCGGCGUcGGCgCCCg--GGCCGGGGGu -3'
miRNA:   3'- gGGUUGUA-CCG-GGGacaUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 120861 0.76 0.240867
Target:  5'- cCCCGGC--GGCCCCUGgcGCCGccuggucccccGGGGa -3'
miRNA:   3'- -GGGUUGuaCCGGGGACauCGGC-----------CCCC- -5'
5998 3' -59.8 NC_001806.1 + 69970 0.76 0.26424
Target:  5'- cCCCuACGuucUGGCCCUgGUGGUCGGGGa -3'
miRNA:   3'- -GGGuUGU---ACCGGGGaCAUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 12797 0.76 0.2679
Target:  5'- gCCGGCGaucaGGCCCauguuguucgggGUGGCCGGGGGa -3'
miRNA:   3'- gGGUUGUa---CCGGGga----------CAUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 149685 0.75 0.296
Target:  5'- cCCCAACAUGGCggccguUCCagUGUaagGGUCGGGGGu -3'
miRNA:   3'- -GGGUUGUACCG------GGG--ACA---UCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 106495 0.75 0.296
Target:  5'- cCUCGACGUGGCCCgUG-GGCaucuggacgaCGGGGGa -3'
miRNA:   3'- -GGGUUGUACCGGGgACaUCG----------GCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 89263 0.75 0.309512
Target:  5'- cCCCGGC-UGGCUCCgcgagGGCCGGcGGGc -3'
miRNA:   3'- -GGGUUGuACCGGGGaca--UCGGCC-CCC- -5'
5998 3' -59.8 NC_001806.1 + 147807 0.74 0.34458
Target:  5'- gCCUGGCAUGGgCgccgcggggggCCUGUggggagaGGCCGGGGGg -3'
miRNA:   3'- -GGGUUGUACCgG-----------GGACA-------UCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 132738 0.73 0.376052
Target:  5'- gCCCGGCGUGGCCUCggcgGcAGCCGGa-- -3'
miRNA:   3'- -GGGUUGUACCGGGGa---CaUCGGCCccc -5'
5998 3' -59.8 NC_001806.1 + 4729 0.73 0.376052
Target:  5'- uCCCGuuCGcGGCCCCg--GGCCGGGGc -3'
miRNA:   3'- -GGGUu-GUaCCGGGGacaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 26698 0.73 0.376052
Target:  5'- gCCCGGCGUGGgCCCgggGGgCGGGGc -3'
miRNA:   3'- -GGGUUGUACCgGGGacaUCgGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 7018 0.73 0.376052
Target:  5'- aCCCAACccccGGCCCCaGUugGGCCGGGcGa -3'
miRNA:   3'- -GGGUUGua--CCGGGGaCA--UCGGCCC-Cc -5'
5998 3' -59.8 NC_001806.1 + 147365 0.73 0.392092
Target:  5'- gCCCucu-UGGCCCCUGccGGCgcgaGGGGGg -3'
miRNA:   3'- -GGGuuguACCGGGGACa-UCGg---CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 56257 0.73 0.400278
Target:  5'- gCCAACcgGGCCCC-GUccCCGGGGu -3'
miRNA:   3'- gGGUUGuaCCGGGGaCAucGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 151539 0.73 0.400278
Target:  5'- gCCCGug--GGCCCggGcGGCCGGGGGc -3'
miRNA:   3'- -GGGUuguaCCGGGgaCaUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 73111 0.72 0.425476
Target:  5'- aCCCGGCcgGGCCgCCgGUcGCCGaGGcGGg -3'
miRNA:   3'- -GGGUUGuaCCGG-GGaCAuCGGC-CC-CC- -5'
5998 3' -59.8 NC_001806.1 + 149524 0.72 0.425476
Target:  5'- cCCCAACAgggcgaccccGGUCCCUGUauauauagGGUCaGGGGGu -3'
miRNA:   3'- -GGGUUGUa---------CCGGGGACA--------UCGG-CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 31888 0.72 0.432354
Target:  5'- aCUGACcUGGCCUCUGgccgccacaaagGGCgGGGGGg -3'
miRNA:   3'- gGGUUGuACCGGGGACa-----------UCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 149645 0.72 0.441916
Target:  5'- cCCCAACAUGGCgCCC---GGCUcccguguaugaguGGGGGu -3'
miRNA:   3'- -GGGUUGUACCG-GGGacaUCGG-------------CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 28489 0.71 0.466781
Target:  5'- cCCCAacacauacACAUGGCCCCUuugacucagacgcagGGCCcGGGGu -3'
miRNA:   3'- -GGGU--------UGUACCGGGGAca-------------UCGGcCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.