miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 3' -59.8 NC_001806.1 + 76045 0.71 0.478569
Target:  5'- cCCUGGCGcGGCUUCUGcggcUGGCgGGGGGg -3'
miRNA:   3'- -GGGUUGUaCCGGGGAC----AUCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 2458 0.71 0.487736
Target:  5'- cCCCGGC--GGCCCCgUGgGGgUGGGGGu -3'
miRNA:   3'- -GGGUUGuaCCGGGG-ACaUCgGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 144949 0.71 0.487736
Target:  5'- gCCAACGgccGGCCCCcGUGGCggcccggccCGGGGc -3'
miRNA:   3'- gGGUUGUa--CCGGGGaCAUCG---------GCCCCc -5'
5998 3' -59.8 NC_001806.1 + 7860 0.71 0.496984
Target:  5'- aCCaagaGACGUcGCCCCUGUGGCCcuGGcGGa -3'
miRNA:   3'- -GGg---UUGUAcCGGGGACAUCGGc-CC-CC- -5'
5998 3' -59.8 NC_001806.1 + 83227 0.71 0.505375
Target:  5'- gCCGACGUGGucaccgcCCCCUcaagGGCCcgcGGGGGg -3'
miRNA:   3'- gGGUUGUACC-------GGGGAca--UCGG---CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 3328 0.71 0.506311
Target:  5'- gCCC-GCG-GGUCCCUccGGCCGcGGGGg -3'
miRNA:   3'- -GGGuUGUaCCGGGGAcaUCGGC-CCCC- -5'
5998 3' -59.8 NC_001806.1 + 147671 0.71 0.506311
Target:  5'- gCCGGCuccGCCCCgggGGCCGGGGc -3'
miRNA:   3'- gGGUUGuacCGGGGacaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 119608 0.7 0.511943
Target:  5'- cCCCGGCgggggccgcuuuGUGGCCCCagcgccccacgGGcCCGGGGGc -3'
miRNA:   3'- -GGGUUG------------UACCGGGGaca--------UC-GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 144590 0.7 0.515711
Target:  5'- gCCgCGGCucuccgGGCCCCccUGcAGCCGGGGcGg -3'
miRNA:   3'- -GG-GUUGua----CCGGGG--ACaUCGGCCCC-C- -5'
5998 3' -59.8 NC_001806.1 + 6058 0.7 0.515711
Target:  5'- gCCCGACuccgcgccGGCCCCgggGgcgGGCCcgggcggcGGGGGg -3'
miRNA:   3'- -GGGUUGua------CCGGGGa--Ca--UCGG--------CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 118927 0.7 0.515711
Target:  5'- gCCGGCAcacccUGGCCuCCUuccgcGUGcguccagcGCCGGGGGg -3'
miRNA:   3'- gGGUUGU-----ACCGG-GGA-----CAU--------CGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 81461 0.7 0.534717
Target:  5'- uCCC-GCAcGGCCCCuUGgguGCCcuGGGGGu -3'
miRNA:   3'- -GGGuUGUaCCGGGG-ACau-CGG--CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 151309 0.7 0.544313
Target:  5'- gUgGGCcgGGCCUCUGgcGCCggcucgggcGGGGGg -3'
miRNA:   3'- gGgUUGuaCCGGGGACauCGG---------CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 43685 0.7 0.544313
Target:  5'- gCCCu---UGGCCUCUccgccuucgggGUuGCCGGGGGa -3'
miRNA:   3'- -GGGuuguACCGGGGA-----------CAuCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 143596 0.7 0.544313
Target:  5'- aCCCAGCcccGGuCCCCcGUuccCCGGGGGc -3'
miRNA:   3'- -GGGUUGua-CC-GGGGaCAuc-GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 32942 0.7 0.563664
Target:  5'- gCCgGGCcguuguggGGCCCCg--GGCCGGGGc -3'
miRNA:   3'- -GGgUUGua------CCGGGGacaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 96529 0.7 0.563664
Target:  5'- cUCCGGCGccgcccGCCCCUGgcGCCcccccaacGGGGGa -3'
miRNA:   3'- -GGGUUGUac----CGGGGACauCGG--------CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 149768 0.69 0.572434
Target:  5'- cCCCAgACAUGGCgCCCggccccucaccucgcGCUGGGGGc -3'
miRNA:   3'- -GGGU-UGUACCG-GGGacau-----------CGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 52567 0.69 0.57341
Target:  5'- cCCCGgacgACAUGGCCa--GcGGcCCGGGGGg -3'
miRNA:   3'- -GGGU----UGUACCGGggaCaUC-GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 120170 0.69 0.583195
Target:  5'- gCUAugAcuuUGGCCCCgaccaacgcgcGUGGuuGGGGGa -3'
miRNA:   3'- gGGUugU---ACCGGGGa----------CAUCggCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.