miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 3' -59.8 NC_001806.1 + 22897 0.67 0.730067
Target:  5'- gCCCGGCccGccaGCCCCccGcGGCCGGaGGGa -3'
miRNA:   3'- -GGGUUGuaC---CGGGGa-CaUCGGCC-CCC- -5'
5998 3' -59.8 NC_001806.1 + 24692 0.66 0.776402
Target:  5'- gCCGGCccGGCCCg-GUGGCgCGGGccgcGGa -3'
miRNA:   3'- gGGUUGuaCCGGGgaCAUCG-GCCC----CC- -5'
5998 3' -59.8 NC_001806.1 + 26698 0.73 0.376052
Target:  5'- gCCCGGCGUGGgCCCgggGGgCGGGGc -3'
miRNA:   3'- -GGGUUGUACCgGGGacaUCgGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 27708 0.68 0.681755
Target:  5'- aCCGACGcaggccaaGCCCCUGUugcGUCGGcGGGa -3'
miRNA:   3'- gGGUUGUac------CGGGGACAu--CGGCC-CCC- -5'
5998 3' -59.8 NC_001806.1 + 28489 0.71 0.466781
Target:  5'- cCCCAacacauacACAUGGCCCCUuugacucagacgcagGGCCcGGGGu -3'
miRNA:   3'- -GGGU--------UGUACCGGGGAca-------------UCGGcCCCC- -5'
5998 3' -59.8 NC_001806.1 + 28831 0.67 0.710922
Target:  5'- gCCAGCAggggGGCaggaCUUUGUgaGGCgGGGGGg -3'
miRNA:   3'- gGGUUGUa---CCG----GGGACA--UCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 29962 0.68 0.65915
Target:  5'- gCCgCGGCGccgcggggggcgucUGGCCCCU----CCGGGGGg -3'
miRNA:   3'- -GG-GUUGU--------------ACCGGGGAcaucGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 30965 0.67 0.724354
Target:  5'- cUCUAGCGUGGUcgCCCUGUcgccuuacgugaacaAGacuaucaCGGGGGa -3'
miRNA:   3'- -GGGUUGUACCG--GGGACA---------------UCg------GCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 31888 0.72 0.432354
Target:  5'- aCUGACcUGGCCUCUGgccgccacaaagGGCgGGGGGg -3'
miRNA:   3'- gGGUUGuACCGGGGACa-----------UCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 32942 0.7 0.563664
Target:  5'- gCCgGGCcguuguggGGCCCCg--GGCCGGGGc -3'
miRNA:   3'- -GGgUUGua------CCGGGGacaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 32980 0.67 0.701251
Target:  5'- gUCCGcCggGGCCCCg--GGCCGGGc- -3'
miRNA:   3'- -GGGUuGuaCCGGGGacaUCGGCCCcc -5'
5998 3' -59.8 NC_001806.1 + 33032 0.67 0.730067
Target:  5'- cCCCGAguguuCAUcucaGGCCCCg--GGCCGGGa- -3'
miRNA:   3'- -GGGUU-----GUA----CCGGGGacaUCGGCCCcc -5'
5998 3' -59.8 NC_001806.1 + 34415 0.67 0.691526
Target:  5'- gCCgGGCcgGGCCgggCCg--GGCCGGGuGGg -3'
miRNA:   3'- -GGgUUGuaCCGG---GGacaUCGGCCC-CC- -5'
5998 3' -59.8 NC_001806.1 + 43685 0.7 0.544313
Target:  5'- gCCCu---UGGCCUCUccgccuucgggGUuGCCGGGGGa -3'
miRNA:   3'- -GGGuuguACCGGGGA-----------CAuCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 44926 0.68 0.632483
Target:  5'- aCCCAguauuACGUGGUgCCCggggcugGcUAGCgCGGGGGc -3'
miRNA:   3'- -GGGU-----UGUACCG-GGGa------C-AUCG-GCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 46376 0.68 0.662106
Target:  5'- cCCCGACGcgccaUGGaCCCCccggGUGGCCGGc-- -3'
miRNA:   3'- -GGGUUGU-----ACC-GGGGa---CAUCGGCCccc -5'
5998 3' -59.8 NC_001806.1 + 48364 0.66 0.758172
Target:  5'- gUCGAC--GGCCCCcccgaccgaUGUcAGCCuGGGGGa -3'
miRNA:   3'- gGGUUGuaCCGGGG---------ACA-UCGG-CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 49683 0.67 0.72053
Target:  5'- aUCGAC-UGGCCCCUcagGUuGCCGuGuGGGa -3'
miRNA:   3'- gGGUUGuACCGGGGA---CAuCGGC-C-CCC- -5'
5998 3' -59.8 NC_001806.1 + 50143 0.68 0.681755
Target:  5'- cCCCAAUccGGCCCCgacgccgcgGUGuuccgcagcucGCUGGGGu -3'
miRNA:   3'- -GGGUUGuaCCGGGGa--------CAU-----------CGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 50392 0.68 0.632483
Target:  5'- gUCCA--GUGGCUCUcgGUGGUCGuGGGGg -3'
miRNA:   3'- -GGGUugUACCGGGGa-CAUCGGC-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.