miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 3' -59.8 NC_001806.1 + 150101 0.66 0.748897
Target:  5'- gCCCAccGCGgggcGGCCCC-GUccCCGGGGa -3'
miRNA:   3'- -GGGU--UGUa---CCGGGGaCAucGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 132981 0.67 0.738584
Target:  5'- gCUgGugGUGGCcgcucccucagagCCCUG-GGCCGGGGc -3'
miRNA:   3'- -GGgUugUACCG-------------GGGACaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 55549 0.67 0.736697
Target:  5'- gCCCGACuUGGCgggggugguguuguUCUUGgguuuggGGUCGGGGGu -3'
miRNA:   3'- -GGGUUGuACCG--------------GGGACa------UCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 130814 0.67 0.733861
Target:  5'- -gCAcCAUGGCCgcgcgCCUGcauugggacucggcGGCCGGGGGa -3'
miRNA:   3'- ggGUuGUACCGG-----GGACa-------------UCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 22897 0.67 0.730067
Target:  5'- gCCCGGCccGccaGCCCCccGcGGCCGGaGGGa -3'
miRNA:   3'- -GGGUUGuaC---CGGGGa-CaUCGGCC-CCC- -5'
5998 3' -59.8 NC_001806.1 + 33032 0.67 0.730067
Target:  5'- cCCCGAguguuCAUcucaGGCCCCg--GGCCGGGa- -3'
miRNA:   3'- -GGGUU-----GUA----CCGGGGacaUCGGCCCcc -5'
5998 3' -59.8 NC_001806.1 + 53196 0.67 0.730067
Target:  5'- cCCCGuACAUugaGGCggaaaaucCCCUGUAcGaCUGGGGGg -3'
miRNA:   3'- -GGGU-UGUA---CCG--------GGGACAU-C-GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 71799 0.67 0.730067
Target:  5'- aCCAGuucGcGCCcgaCCUGgAGCCGGGGGg -3'
miRNA:   3'- gGGUUguaC-CGG---GGACaUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 113280 0.67 0.730067
Target:  5'- gCCGACGUGGagCU----GCCGGGGGg -3'
miRNA:   3'- gGGUUGUACCggGGacauCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 30965 0.67 0.724354
Target:  5'- cUCUAGCGUGGUcgCCCUGUcgccuuacgugaacaAGacuaucaCGGGGGa -3'
miRNA:   3'- -GGGUUGUACCG--GGGACA---------------UCg------GCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 21504 0.67 0.72053
Target:  5'- -gCGACcgGGCCCC---GGCCcGGGGc -3'
miRNA:   3'- ggGUUGuaCCGGGGacaUCGGcCCCC- -5'
5998 3' -59.8 NC_001806.1 + 49683 0.67 0.72053
Target:  5'- aUCGAC-UGGCCCCUcagGUuGCCGuGuGGGa -3'
miRNA:   3'- gGGUUGuACCGGGGA---CAuCGGC-C-CCC- -5'
5998 3' -59.8 NC_001806.1 + 73957 0.67 0.710922
Target:  5'- -aCAGCAcgccgGGCCCCUcggcGUaaugcccgccccGGCCGGGGcGg -3'
miRNA:   3'- ggGUUGUa----CCGGGGA----CA------------UCGGCCCC-C- -5'
5998 3' -59.8 NC_001806.1 + 28831 0.67 0.710922
Target:  5'- gCCAGCAggggGGCaggaCUUUGUgaGGCgGGGGGg -3'
miRNA:   3'- gGGUUGUa---CCG----GGGACA--UCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 32980 0.67 0.701251
Target:  5'- gUCCGcCggGGCCCCg--GGCCGGGc- -3'
miRNA:   3'- -GGGUuGuaCCGGGGacaUCGGCCCcc -5'
5998 3' -59.8 NC_001806.1 + 132533 0.67 0.701251
Target:  5'- gCCUuuCuggGGCCCgaGUuugaGGuCCGGGGGg -3'
miRNA:   3'- -GGGuuGua-CCGGGgaCA----UC-GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 147210 0.67 0.701251
Target:  5'- cCCCGGCGgcggaagaggcGGCCCCcGcgggGGUCGGGGc -3'
miRNA:   3'- -GGGUUGUa----------CCGGGGaCa---UCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 19325 0.67 0.700281
Target:  5'- gCCGACAUGuccagaaaaaaccGCCCCccaAGCCuccGGGGGg -3'
miRNA:   3'- gGGUUGUAC-------------CGGGGacaUCGG---CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 121677 0.67 0.691526
Target:  5'- gCCAAgAUGGCCCagUGUacccuGGCgguccaGGGGGa -3'
miRNA:   3'- gGGUUgUACCGGGg-ACA-----UCGg-----CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 34415 0.67 0.691526
Target:  5'- gCCgGGCcgGGCCgggCCg--GGCCGGGuGGg -3'
miRNA:   3'- -GGgUUGuaCCGG---GGacaUCGGCCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.