miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 3' -59.8 NC_001806.1 + 50143 0.68 0.681755
Target:  5'- cCCCAAUccGGCCCCgacgccgcgGUGuuccgcagcucGCUGGGGu -3'
miRNA:   3'- -GGGUUGuaCCGGGGa--------CAU-----------CGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 151266 0.68 0.681755
Target:  5'- gCCCAcGCcgGGCggugggggCCgg-GGCCGGGGGg -3'
miRNA:   3'- -GGGU-UGuaCCGg-------GGacaUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 27708 0.68 0.681755
Target:  5'- aCCGACGcaggccaaGCCCCUGUugcGUCGGcGGGa -3'
miRNA:   3'- gGGUUGUac------CGGGGACAu--CGGCC-CCC- -5'
5998 3' -59.8 NC_001806.1 + 121531 0.68 0.680776
Target:  5'- aUCUGGgAUGGCUCCUGgccAGgaucaccaaccacCCGGGGGg -3'
miRNA:   3'- -GGGUUgUACCGGGGACa--UC-------------GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 147762 0.68 0.671946
Target:  5'- uCCCGACGcGGCCgCggacGCgGGGGGc -3'
miRNA:   3'- -GGGUUGUaCCGGgGacauCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 75582 0.68 0.662106
Target:  5'- cCCCAGCggGcGCgCCCUGcaggAGCUGGGa- -3'
miRNA:   3'- -GGGUUGuaC-CG-GGGACa---UCGGCCCcc -5'
5998 3' -59.8 NC_001806.1 + 46376 0.68 0.662106
Target:  5'- cCCCGACGcgccaUGGaCCCCccggGUGGCCGGc-- -3'
miRNA:   3'- -GGGUUGU-----ACC-GGGGa---CAUCGGCCccc -5'
5998 3' -59.8 NC_001806.1 + 64902 0.68 0.661121
Target:  5'- aCCAGCGccGGCCUCUGgcGUCGGcgcguguGGGu -3'
miRNA:   3'- gGGUUGUa-CCGGGGACauCGGCC-------CCC- -5'
5998 3' -59.8 NC_001806.1 + 29962 0.68 0.65915
Target:  5'- gCCgCGGCGccgcggggggcgucUGGCCCCU----CCGGGGGg -3'
miRNA:   3'- -GG-GUUGU--------------ACCGGGGAcaucGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 98007 0.68 0.652245
Target:  5'- cCCCAACGccaucgccucGGCCaCCgugGGCCGGcGGGu -3'
miRNA:   3'- -GGGUUGUa---------CCGG-GGacaUCGGCC-CCC- -5'
5998 3' -59.8 NC_001806.1 + 84223 0.68 0.652245
Target:  5'- gCCCucugAUGGCCaCC-GUgcugaaacacGGCCGGGGGc -3'
miRNA:   3'- -GGGuug-UACCGG-GGaCA----------UCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 4345 0.68 0.652245
Target:  5'- gCCCGGCGgcgcucgaugcGGCCCgCgGaGGCCGcGGGGg -3'
miRNA:   3'- -GGGUUGUa----------CCGGG-GaCaUCGGC-CCCC- -5'
5998 3' -59.8 NC_001806.1 + 4053 0.68 0.642367
Target:  5'- gCCCAGCucgGGCgCCCacacgGccGCCGGGGc -3'
miRNA:   3'- -GGGUUGua-CCG-GGGa----CauCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 90305 0.68 0.641379
Target:  5'- gCCAACGUGGCCgUggucguggGUucucgcacgacggGGCuCGGGGGu -3'
miRNA:   3'- gGGUUGUACCGGgGa-------CA-------------UCG-GCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 44926 0.68 0.632483
Target:  5'- aCCCAguauuACGUGGUgCCCggggcugGcUAGCgCGGGGGc -3'
miRNA:   3'- -GGGU-----UGUACCG-GGGa------C-AUCG-GCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 50392 0.68 0.632483
Target:  5'- gUCCA--GUGGCUCUcgGUGGUCGuGGGGg -3'
miRNA:   3'- -GGGUugUACCGGGGa-CAUCGGC-CCCC- -5'
5998 3' -59.8 NC_001806.1 + 144985 0.69 0.622598
Target:  5'- cCCCGGCGgacccaaggGGCCCC---GGCCcGGGGc -3'
miRNA:   3'- -GGGUUGUa--------CCGGGGacaUCGGcCCCC- -5'
5998 3' -59.8 NC_001806.1 + 5101 0.69 0.622598
Target:  5'- gCCCGuCGguggGGCCCggGgAGCCGGGGc -3'
miRNA:   3'- -GGGUuGUa---CCGGGgaCaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 22059 0.69 0.612721
Target:  5'- gCCCGGCGccgGGCCCCcGcccCCGGGGcGg -3'
miRNA:   3'- -GGGUUGUa--CCGGGGaCaucGGCCCC-C- -5'
5998 3' -59.8 NC_001806.1 + 15833 0.69 0.612721
Target:  5'- aUCUGACugucgcacgGGCCCCUuuuggGGCCGcGGGGg -3'
miRNA:   3'- -GGGUUGua-------CCGGGGAca---UCGGC-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.