miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 3' -59.8 NC_001806.1 + 151539 0.73 0.400278
Target:  5'- gCCCGug--GGCCCggGcGGCCGGGGGc -3'
miRNA:   3'- -GGGUuguaCCGGGgaCaUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 151309 0.7 0.544313
Target:  5'- gUgGGCcgGGCCUCUGgcGCCggcucgggcGGGGGg -3'
miRNA:   3'- gGgUUGuaCCGGGGACauCGG---------CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 151266 0.68 0.681755
Target:  5'- gCCCAcGCcgGGCggugggggCCgg-GGCCGGGGGg -3'
miRNA:   3'- -GGGU-UGuaCCGg-------GGacaUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 150101 0.66 0.748897
Target:  5'- gCCCAccGCGgggcGGCCCC-GUccCCGGGGa -3'
miRNA:   3'- -GGGU--UGUa---CCGGGGaCAucGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 149768 0.69 0.572434
Target:  5'- cCCCAgACAUGGCgCCCggccccucaccucgcGCUGGGGGc -3'
miRNA:   3'- -GGGU-UGUACCG-GGGacau-----------CGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 149685 0.75 0.296
Target:  5'- cCCCAACAUGGCggccguUCCagUGUaagGGUCGGGGGu -3'
miRNA:   3'- -GGGUUGUACCG------GGG--ACA---UCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 149645 0.72 0.441916
Target:  5'- cCCCAACAUGGCgCCC---GGCUcccguguaugaguGGGGGu -3'
miRNA:   3'- -GGGUUGUACCG-GGGacaUCGG-------------CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 149578 0.66 0.767343
Target:  5'- cCCUAACAUGGCgcccccgguCCCUGUauauauAGUgucaCGGGGu -3'
miRNA:   3'- -GGGUUGUACCG---------GGGACA------UCG----GCCCCc -5'
5998 3' -59.8 NC_001806.1 + 149524 0.72 0.425476
Target:  5'- cCCCAACAgggcgaccccGGUCCCUGUauauauagGGUCaGGGGGu -3'
miRNA:   3'- -GGGUUGUa---------CCGGGGACA--------UCGG-CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 147807 0.74 0.34458
Target:  5'- gCCUGGCAUGGgCgccgcggggggCCUGUggggagaGGCCGGGGGg -3'
miRNA:   3'- -GGGUUGUACCgG-----------GGACA-------UCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 147762 0.68 0.671946
Target:  5'- uCCCGACGcGGCCgCggacGCgGGGGGc -3'
miRNA:   3'- -GGGUUGUaCCGGgGacauCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 147671 0.71 0.506311
Target:  5'- gCCGGCuccGCCCCgggGGCCGGGGc -3'
miRNA:   3'- gGGUUGuacCGGGGacaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 147365 0.73 0.392092
Target:  5'- gCCCucu-UGGCCCCUGccGGCgcgaGGGGGg -3'
miRNA:   3'- -GGGuuguACCGGGGACa-UCGg---CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 147210 0.67 0.701251
Target:  5'- cCCCGGCGgcggaagaggcGGCCCCcGcgggGGUCGGGGc -3'
miRNA:   3'- -GGGUUGUa----------CCGGGGaCa---UCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 144985 0.69 0.622598
Target:  5'- cCCCGGCGgacccaaggGGCCCC---GGCCcGGGGc -3'
miRNA:   3'- -GGGUUGUa--------CCGGGGacaUCGGcCCCC- -5'
5998 3' -59.8 NC_001806.1 + 144949 0.71 0.487736
Target:  5'- gCCAACGgccGGCCCCcGUGGCggcccggccCGGGGc -3'
miRNA:   3'- gGGUUGUa--CCGGGGaCAUCG---------GCCCCc -5'
5998 3' -59.8 NC_001806.1 + 144590 0.7 0.515711
Target:  5'- gCCgCGGCucuccgGGCCCCccUGcAGCCGGGGcGg -3'
miRNA:   3'- -GG-GUUGua----CCGGGG--ACaUCGGCCCC-C- -5'
5998 3' -59.8 NC_001806.1 + 143596 0.7 0.544313
Target:  5'- aCCCAGCcccGGuCCCCcGUuccCCGGGGGc -3'
miRNA:   3'- -GGGUUGua-CC-GGGGaCAuc-GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 132981 0.67 0.738584
Target:  5'- gCUgGugGUGGCcgcucccucagagCCCUG-GGCCGGGGc -3'
miRNA:   3'- -GGgUugUACCG-------------GGGACaUCGGCCCCc -5'
5998 3' -59.8 NC_001806.1 + 132895 0.69 0.593012
Target:  5'- gCCCAGCuccUGGCggCCCUGgccgaccUCGGGGGg -3'
miRNA:   3'- -GGGUUGu--ACCG--GGGACauc----GGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.