miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 5' -54.6 NC_001806.1 + 24369 0.77 0.412914
Target:  5'- uCGCGCGCGUggagGCcGCGCACGcGCGc -3'
miRNA:   3'- -GCGCGUGCAaa--CGuCGCGUGUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 1805 0.76 0.44822
Target:  5'- uGCGCACGcg-GUAGCGCACGUugccgccGCGGc -3'
miRNA:   3'- gCGCGUGCaaaCGUCGCGUGUA-------CGCU- -5'
5998 5' -54.6 NC_001806.1 + 95270 0.74 0.556726
Target:  5'- gGCGCuGCGUcgcgUGCuGGCGCGCAUGgGGg -3'
miRNA:   3'- gCGCG-UGCAa---ACG-UCGCGUGUACgCU- -5'
5998 5' -54.6 NC_001806.1 + 1634 0.73 0.577198
Target:  5'- aGCGCGCGcagGCGGCGUGCGaGUGGg -3'
miRNA:   3'- gCGCGUGCaaaCGUCGCGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 25928 0.73 0.577198
Target:  5'- uGCGCGCGc--GCGGCGgGCGUGgGGg -3'
miRNA:   3'- gCGCGUGCaaaCGUCGCgUGUACgCU- -5'
5998 5' -54.6 NC_001806.1 + 47684 0.72 0.638307
Target:  5'- gCGCGCcaGCGUccgGCagcugcaccgccaGGCGCACAUGCGc -3'
miRNA:   3'- -GCGCG--UGCAaa-CG-------------UCGCGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 50529 0.72 0.639346
Target:  5'- gGCGCugGgcgacaccGCAGCGCGCcgGCu- -3'
miRNA:   3'- gCGCGugCaaa-----CGUCGCGUGuaCGcu -5'
5998 5' -54.6 NC_001806.1 + 106552 0.72 0.660101
Target:  5'- cCGCGCugGUgcGC-GCGCGCuacggGCGGg -3'
miRNA:   3'- -GCGCGugCAaaCGuCGCGUGua---CGCU- -5'
5998 5' -54.6 NC_001806.1 + 76384 0.72 0.670448
Target:  5'- aCGCGCugGUggcgugcgugGCGGCGCugGaGCGc -3'
miRNA:   3'- -GCGCGugCAaa--------CGUCGCGugUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 1852 0.71 0.701261
Target:  5'- gGCGCGuCGgg-GUacaGGCGCGCGUGCGc -3'
miRNA:   3'- gCGCGU-GCaaaCG---UCGCGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 95638 0.71 0.711424
Target:  5'- cCGCGguCGccaacggcUUUGCGGCGCGCGcGCGc -3'
miRNA:   3'- -GCGCguGC--------AAACGUCGCGUGUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 17945 0.71 0.721518
Target:  5'- --aGCGCGaUUGUAuGCGCugGUGCGGu -3'
miRNA:   3'- gcgCGUGCaAACGU-CGCGugUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 22978 0.71 0.741459
Target:  5'- uGCGCGCGUg-GCuGCGCGagcUGCGGu -3'
miRNA:   3'- gCGCGUGCAaaCGuCGCGUgu-ACGCU- -5'
5998 5' -54.6 NC_001806.1 + 51338 0.71 0.741459
Target:  5'- aCGCGgGCGUUcccgaGCGGCGCAUcuucgGCGGg -3'
miRNA:   3'- -GCGCgUGCAAa----CGUCGCGUGua---CGCU- -5'
5998 5' -54.6 NC_001806.1 + 74707 0.7 0.761005
Target:  5'- gCGUGCcCGUUUGCgggAGCGCGCGcGCu- -3'
miRNA:   3'- -GCGCGuGCAAACG---UCGCGUGUaCGcu -5'
5998 5' -54.6 NC_001806.1 + 24626 0.7 0.780082
Target:  5'- gCGCGCugGg--GCcugGGCGCGCcgcUGCGGc -3'
miRNA:   3'- -GCGCGugCaaaCG---UCGCGUGu--ACGCU- -5'
5998 5' -54.6 NC_001806.1 + 3251 0.7 0.786633
Target:  5'- uCGCGCACGaaccGCAgcucgcgcagccacGCGCGCAgGCGGg -3'
miRNA:   3'- -GCGCGUGCaaa-CGU--------------CGCGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 4334 0.7 0.78942
Target:  5'- cCGcCGCGCGggcccgGCGGCGCuCgAUGCGGc -3'
miRNA:   3'- -GC-GCGUGCaaa---CGUCGCGuG-UACGCU- -5'
5998 5' -54.6 NC_001806.1 + 86726 0.69 0.798611
Target:  5'- uGCGCAUGgaauaggGCccgggGGCGCGCAUGuCGGc -3'
miRNA:   3'- gCGCGUGCaaa----CG-----UCGCGUGUAC-GCU- -5'
5998 5' -54.6 NC_001806.1 + 41833 0.69 0.807648
Target:  5'- gGCGgGCGUcaggGCcccgggcGCGUACGUGCGAg -3'
miRNA:   3'- gCGCgUGCAaa--CGu------CGCGUGUACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.