miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 5' -54.6 NC_001806.1 + 1634 0.73 0.577198
Target:  5'- aGCGCGCGcagGCGGCGUGCGaGUGGg -3'
miRNA:   3'- gCGCGUGCaaaCGUCGCGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 1805 0.76 0.44822
Target:  5'- uGCGCACGcg-GUAGCGCACGUugccgccGCGGc -3'
miRNA:   3'- gCGCGUGCaaaCGUCGCGUGUA-------CGCU- -5'
5998 5' -54.6 NC_001806.1 + 1852 0.71 0.701261
Target:  5'- gGCGCGuCGgg-GUacaGGCGCGCGUGCGc -3'
miRNA:   3'- gCGCGU-GCaaaCG---UCGCGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 1964 0.68 0.858133
Target:  5'- aGCGCACGgc-GCAcUGCACG-GCGGg -3'
miRNA:   3'- gCGCGUGCaaaCGUcGCGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 2367 0.67 0.907432
Target:  5'- aCGCGCACGUccucgggGUcggggaucuGGCGCAuccaggccgcCAUGCGGc -3'
miRNA:   3'- -GCGCGUGCAaa-----CG---------UCGCGU----------GUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 3009 0.66 0.930363
Target:  5'- cCGCcaGCGCGUcgGCGGCGUccgGUGCGc -3'
miRNA:   3'- -GCG--CGUGCAaaCGUCGCGug-UACGCu -5'
5998 5' -54.6 NC_001806.1 + 3120 0.66 0.944982
Target:  5'- gGCGCGgGUcccgcgGCAGCGCGgggcccagggccCcgGCGAc -3'
miRNA:   3'- gCGCGUgCAaa----CGUCGCGU------------GuaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 3173 0.67 0.901088
Target:  5'- gCGCGCACG---GCGGC-CACG-GCGGc -3'
miRNA:   3'- -GCGCGUGCaaaCGUCGcGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 3251 0.7 0.786633
Target:  5'- uCGCGCACGaaccGCAgcucgcgcagccacGCGCGCAgGCGGg -3'
miRNA:   3'- -GCGCGUGCaaa-CGU--------------CGCGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 4334 0.7 0.78942
Target:  5'- cCGcCGCGCGggcccgGCGGCGCuCgAUGCGGc -3'
miRNA:   3'- -GC-GCGUGCaaa---CGUCGCGuG-UACGCU- -5'
5998 5' -54.6 NC_001806.1 + 10100 0.66 0.935481
Target:  5'- aCGUcCACGUacucGCGGCGCACG-GCGc -3'
miRNA:   3'- -GCGcGUGCAaa--CGUCGCGUGUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 10710 0.67 0.901088
Target:  5'- gGCGUACGccaucGCcagcgggaccggAGCGCGCAUGCa- -3'
miRNA:   3'- gCGCGUGCaaa--CG------------UCGCGUGUACGcu -5'
5998 5' -54.6 NC_001806.1 + 17945 0.71 0.721518
Target:  5'- --aGCGCGaUUGUAuGCGCugGUGCGGu -3'
miRNA:   3'- gcgCGUGCaAACGU-CGCGugUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 22545 0.67 0.907432
Target:  5'- gGCGCGCGagaacGCGGCGCugAcGgGGg -3'
miRNA:   3'- gCGCGUGCaaa--CGUCGCGugUaCgCU- -5'
5998 5' -54.6 NC_001806.1 + 22978 0.71 0.741459
Target:  5'- uGCGCGCGUg-GCuGCGCGagcUGCGGu -3'
miRNA:   3'- gCGCGUGCAaaCGuCGCGUgu-ACGCU- -5'
5998 5' -54.6 NC_001806.1 + 24297 0.68 0.858133
Target:  5'- uGCGCugGccgGCGGCGCGgGaccUGCGc -3'
miRNA:   3'- gCGCGugCaaaCGUCGCGUgU---ACGCu -5'
5998 5' -54.6 NC_001806.1 + 24369 0.77 0.412914
Target:  5'- uCGCGCGCGUggagGCcGCGCACGcGCGc -3'
miRNA:   3'- -GCGCGUGCAaa--CGuCGCGUGUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 24626 0.7 0.780082
Target:  5'- gCGCGCugGg--GCcugGGCGCGCcgcUGCGGc -3'
miRNA:   3'- -GCGCGugCaaaCG---UCGCGUGu--ACGCU- -5'
5998 5' -54.6 NC_001806.1 + 24657 0.66 0.924999
Target:  5'- cCGUGUACGUggcgcUGgGGCGCGag-GCGGu -3'
miRNA:   3'- -GCGCGUGCAa----ACgUCGCGUguaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 25928 0.73 0.577198
Target:  5'- uGCGCGCGc--GCGGCGgGCGUGgGGg -3'
miRNA:   3'- gCGCGUGCaaaCGUCGCgUGUACgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.