miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 5' -54.6 NC_001806.1 + 147648 0.69 0.84207
Target:  5'- gGCGCGCGUccGCGGgGCGg--GCGGc -3'
miRNA:   3'- gCGCGUGCAaaCGUCgCGUguaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 135096 0.68 0.86888
Target:  5'- gGCGCcgaccggggagggggGCGgggGCAGCGCuGCGUGCu- -3'
miRNA:   3'- gCGCG---------------UGCaaaCGUCGCG-UGUACGcu -5'
5998 5' -54.6 NC_001806.1 + 133664 0.67 0.907432
Target:  5'- aCGCagaGCACuacugGCGGCGCGuCGUGCGu -3'
miRNA:   3'- -GCG---CGUGcaaa-CGUCGCGU-GUACGCu -5'
5998 5' -54.6 NC_001806.1 + 132171 0.66 0.935481
Target:  5'- cCGaCGCGCGgcugGCgugGGCGCGCcugGCGGc -3'
miRNA:   3'- -GC-GCGUGCaaa-CG---UCGCGUGua-CGCU- -5'
5998 5' -54.6 NC_001806.1 + 131791 0.66 0.934981
Target:  5'- uCGCGCGCGcUUUGCGGaggucuccgucacCGCgACGgagcUGCGGg -3'
miRNA:   3'- -GCGCGUGC-AAACGUC-------------GCG-UGU----ACGCU- -5'
5998 5' -54.6 NC_001806.1 + 130557 0.66 0.935481
Target:  5'- uCGCGCcgGCGgaaaUUGUcGCGCuCAUGCGc -3'
miRNA:   3'- -GCGCG--UGCa---AACGuCGCGuGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 128505 0.67 0.894506
Target:  5'- gGCGaucaGCGUggcgUGCGGCaugGC-CAUGCGGg -3'
miRNA:   3'- gCGCg---UGCAa---ACGUCG---CGuGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 127831 0.68 0.858133
Target:  5'- uGUGCGCGgugucGCGuGuCGCGCAUGCGc -3'
miRNA:   3'- gCGCGUGCaaa--CGU-C-GCGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 122363 0.67 0.887686
Target:  5'- gCGCGCugGcggaaGUGGCGCACGgccGCGu -3'
miRNA:   3'- -GCGCGugCaaa--CGUCGCGUGUa--CGCu -5'
5998 5' -54.6 NC_001806.1 + 119117 0.66 0.935481
Target:  5'- aCGCGCuacGCGgccgacaGCAcGCGCAuCAUGCGc -3'
miRNA:   3'- -GCGCG---UGCaaa----CGU-CGCGU-GUACGCu -5'
5998 5' -54.6 NC_001806.1 + 117748 0.66 0.944982
Target:  5'- uGUGCACGUgcGUGGCGUg---GCGAc -3'
miRNA:   3'- gCGCGUGCAaaCGUCGCGuguaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 116983 0.67 0.901088
Target:  5'- uGUGCACcUUUGaCGGCGCGgccguUGUGCGGu -3'
miRNA:   3'- gCGCGUGcAAAC-GUCGCGU-----GUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 116143 0.66 0.930363
Target:  5'- uCGCGCcccgaugcgGCGgcgcUGCAGCGC---UGCGAa -3'
miRNA:   3'- -GCGCG---------UGCaa--ACGUCGCGuguACGCU- -5'
5998 5' -54.6 NC_001806.1 + 112709 0.67 0.919389
Target:  5'- uGCGCGCGgaucUGguGUcCAUcgGCGAg -3'
miRNA:   3'- gCGCGUGCaa--ACguCGcGUGuaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 108638 0.67 0.907432
Target:  5'- cCGCGCgguguGCGUg-GCuGCGgACAUGCGc -3'
miRNA:   3'- -GCGCG-----UGCAaaCGuCGCgUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 106552 0.72 0.660101
Target:  5'- cCGCGCugGUgcGC-GCGCGCuacggGCGGg -3'
miRNA:   3'- -GCGCGugCAaaCGuCGCGUGua---CGCU- -5'
5998 5' -54.6 NC_001806.1 + 100893 0.67 0.907432
Target:  5'- uCGCGCACagcgcgacgUGC-GCGaacaGCGUGCGAu -3'
miRNA:   3'- -GCGCGUGcaa------ACGuCGCg---UGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 95638 0.71 0.711424
Target:  5'- cCGCGguCGccaacggcUUUGCGGCGCGCGcGCGc -3'
miRNA:   3'- -GCGCguGC--------AAACGUCGCGUGUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 95270 0.74 0.556726
Target:  5'- gGCGCuGCGUcgcgUGCuGGCGCGCAUGgGGg -3'
miRNA:   3'- gCGCG-UGCAa---ACG-UCGCGUGUACgCU- -5'
5998 5' -54.6 NC_001806.1 + 95008 0.68 0.873354
Target:  5'- cCGCGCugGc--GCGGCGCGaguUGCa- -3'
miRNA:   3'- -GCGCGugCaaaCGUCGCGUgu-ACGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.