miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 5' -54.6 NC_001806.1 + 26807 0.66 0.924999
Target:  5'- gCGCGCcuGCGccUGCGaCGCGCggGCGGg -3'
miRNA:   3'- -GCGCG--UGCaaACGUcGCGUGuaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 30215 0.67 0.907432
Target:  5'- cCGCGCGCccccgcGCGGCcguggccccGUGCGUGCGAg -3'
miRNA:   3'- -GCGCGUGcaaa--CGUCG---------CGUGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 30387 0.67 0.913533
Target:  5'- cCGgGCGCGUgcgacgGUGGCGCGCG-GCu- -3'
miRNA:   3'- -GCgCGUGCAaa----CGUCGCGUGUaCGcu -5'
5998 5' -54.6 NC_001806.1 + 34307 0.66 0.940354
Target:  5'- aGCG-GCGggggGCGGCGCGCcgGaCGGg -3'
miRNA:   3'- gCGCgUGCaaa-CGUCGCGUGuaC-GCU- -5'
5998 5' -54.6 NC_001806.1 + 41833 0.69 0.807648
Target:  5'- gGCGgGCGUcaggGCcccgggcGCGUACGUGCGAg -3'
miRNA:   3'- gCGCgUGCAaa--CGu------CGCGUGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 45330 0.68 0.873354
Target:  5'- gCGgGCGCGaugggaucgGgGGCGCGCgGUGCGAg -3'
miRNA:   3'- -GCgCGUGCaaa------CgUCGCGUG-UACGCU- -5'
5998 5' -54.6 NC_001806.1 + 47684 0.72 0.638307
Target:  5'- gCGCGCcaGCGUccgGCagcugcaccgccaGGCGCACAUGCGc -3'
miRNA:   3'- -GCGCG--UGCAaa-CG-------------UCGCGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 50418 0.66 0.924999
Target:  5'- gGCGCGCc--UGCAccCGCACGUGCa- -3'
miRNA:   3'- gCGCGUGcaaACGUc-GCGUGUACGcu -5'
5998 5' -54.6 NC_001806.1 + 50529 0.72 0.639346
Target:  5'- gGCGCugGgcgacaccGCAGCGCGCcgGCu- -3'
miRNA:   3'- gCGCGugCaaa-----CGUCGCGUGuaCGcu -5'
5998 5' -54.6 NC_001806.1 + 50582 0.66 0.924999
Target:  5'- cCGUGCugGgcgcUGCGGUGUACGcgcUGCa- -3'
miRNA:   3'- -GCGCGugCaa--ACGUCGCGUGU---ACGcu -5'
5998 5' -54.6 NC_001806.1 + 51122 0.66 0.939877
Target:  5'- gGCGCACGUgucgGggaGGCGCGCGaccgggcUGgGAg -3'
miRNA:   3'- gCGCGUGCAaa--Cg--UCGCGUGU-------ACgCU- -5'
5998 5' -54.6 NC_001806.1 + 51338 0.71 0.741459
Target:  5'- aCGCGgGCGUUcccgaGCGGCGCAUcuucgGCGGg -3'
miRNA:   3'- -GCGCgUGCAAa----CGUCGCGUGua---CGCU- -5'
5998 5' -54.6 NC_001806.1 + 69119 0.68 0.880634
Target:  5'- uGCGCcccCGgggacGCuaauGGCGCGCGUGCGGa -3'
miRNA:   3'- gCGCGu--GCaaa--CG----UCGCGUGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 70401 0.69 0.84207
Target:  5'- aCGC-CAuCGUgcugcUGCGGCuGCACAUGCGc -3'
miRNA:   3'- -GCGcGU-GCAa----ACGUCG-CGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 71947 0.69 0.83374
Target:  5'- aCGCGCGCGaccGCGGgcccugggccgcCGCGCAUGUGu -3'
miRNA:   3'- -GCGCGUGCaaaCGUC------------GCGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 74707 0.7 0.761005
Target:  5'- gCGUGCcCGUUUGCgggAGCGCGCGcGCu- -3'
miRNA:   3'- -GCGCGuGCAAACG---UCGCGUGUaCGcu -5'
5998 5' -54.6 NC_001806.1 + 75487 0.67 0.901088
Target:  5'- aCGCGCGCGaccacCGGCGCGCGggaaagccucGCGGg -3'
miRNA:   3'- -GCGCGUGCaaac-GUCGCGUGUa---------CGCU- -5'
5998 5' -54.6 NC_001806.1 + 76384 0.72 0.670448
Target:  5'- aCGCGCugGUggcgugcgugGCGGCGCugGaGCGc -3'
miRNA:   3'- -GCGCGugCAaa--------CGUCGCGugUaCGCu -5'
5998 5' -54.6 NC_001806.1 + 77384 0.66 0.944982
Target:  5'- aCGgGCGCGggcgcgGCGGCcGCGCccGCGc -3'
miRNA:   3'- -GCgCGUGCaaa---CGUCG-CGUGuaCGCu -5'
5998 5' -54.6 NC_001806.1 + 86726 0.69 0.798611
Target:  5'- uGCGCAUGgaauaggGCccgggGGCGCGCAUGuCGGc -3'
miRNA:   3'- gCGCGUGCaaa----CG-----UCGCGUGUAC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.