miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 5' -54.6 NC_001806.1 + 100893 0.67 0.907432
Target:  5'- uCGCGCACagcgcgacgUGC-GCGaacaGCGUGCGAu -3'
miRNA:   3'- -GCGCGUGcaa------ACGuCGCg---UGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 133664 0.67 0.907432
Target:  5'- aCGCagaGCACuacugGCGGCGCGuCGUGCGu -3'
miRNA:   3'- -GCG---CGUGcaaa-CGUCGCGU-GUACGCu -5'
5998 5' -54.6 NC_001806.1 + 2367 0.67 0.907432
Target:  5'- aCGCGCACGUccucgggGUcggggaucuGGCGCAuccaggccgcCAUGCGGc -3'
miRNA:   3'- -GCGCGUGCAaa-----CG---------UCGCGU----------GUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 108638 0.67 0.907432
Target:  5'- cCGCGCgguguGCGUg-GCuGCGgACAUGCGc -3'
miRNA:   3'- -GCGCG-----UGCAaaCGuCGCgUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 30215 0.67 0.907432
Target:  5'- cCGCGCGCccccgcGCGGCcguggccccGUGCGUGCGAg -3'
miRNA:   3'- -GCGCGUGcaaa--CGUCG---------CGUGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 75487 0.67 0.901088
Target:  5'- aCGCGCGCGaccacCGGCGCGCGggaaagccucGCGGg -3'
miRNA:   3'- -GCGCGUGCaaac-GUCGCGUGUa---------CGCU- -5'
5998 5' -54.6 NC_001806.1 + 3173 0.67 0.901088
Target:  5'- gCGCGCACG---GCGGC-CACG-GCGGc -3'
miRNA:   3'- -GCGCGUGCaaaCGUCGcGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 116983 0.67 0.901088
Target:  5'- uGUGCACcUUUGaCGGCGCGgccguUGUGCGGu -3'
miRNA:   3'- gCGCGUGcAAAC-GUCGCGU-----GUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 10710 0.67 0.901088
Target:  5'- gGCGUACGccaucGCcagcgggaccggAGCGCGCAUGCa- -3'
miRNA:   3'- gCGCGUGCaaa--CG------------UCGCGUGUACGcu -5'
5998 5' -54.6 NC_001806.1 + 128505 0.67 0.894506
Target:  5'- gGCGaucaGCGUggcgUGCGGCaugGC-CAUGCGGg -3'
miRNA:   3'- gCGCg---UGCAa---ACGUCG---CGuGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 122363 0.67 0.887686
Target:  5'- gCGCGCugGcggaaGUGGCGCACGgccGCGu -3'
miRNA:   3'- -GCGCGugCaaa--CGUCGCGUGUa--CGCu -5'
5998 5' -54.6 NC_001806.1 + 69119 0.68 0.880634
Target:  5'- uGCGCcccCGgggacGCuaauGGCGCGCGUGCGGa -3'
miRNA:   3'- gCGCGu--GCaaa--CG----UCGCGUGUACGCU- -5'
5998 5' -54.6 NC_001806.1 + 95008 0.68 0.873354
Target:  5'- cCGCGCugGc--GCGGCGCGaguUGCa- -3'
miRNA:   3'- -GCGCGugCaaaCGUCGCGUgu-ACGcu -5'
5998 5' -54.6 NC_001806.1 + 45330 0.68 0.873354
Target:  5'- gCGgGCGCGaugggaucgGgGGCGCGCgGUGCGAg -3'
miRNA:   3'- -GCgCGUGCaaa------CgUCGCGUG-UACGCU- -5'
5998 5' -54.6 NC_001806.1 + 135096 0.68 0.86888
Target:  5'- gGCGCcgaccggggagggggGCGgggGCAGCGCuGCGUGCu- -3'
miRNA:   3'- gCGCG---------------UGCaaaCGUCGCG-UGUACGcu -5'
5998 5' -54.6 NC_001806.1 + 127831 0.68 0.858133
Target:  5'- uGUGCGCGgugucGCGuGuCGCGCAUGCGc -3'
miRNA:   3'- gCGCGUGCaaa--CGU-C-GCGUGUACGCu -5'
5998 5' -54.6 NC_001806.1 + 24297 0.68 0.858133
Target:  5'- uGCGCugGccgGCGGCGCGgGaccUGCGc -3'
miRNA:   3'- gCGCGugCaaaCGUCGCGUgU---ACGCu -5'
5998 5' -54.6 NC_001806.1 + 1964 0.68 0.858133
Target:  5'- aGCGCACGgc-GCAcUGCACG-GCGGg -3'
miRNA:   3'- gCGCGUGCaaaCGUcGCGUGUaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 147648 0.69 0.84207
Target:  5'- gGCGCGCGUccGCGGgGCGg--GCGGc -3'
miRNA:   3'- gCGCGUGCAaaCGUCgCGUguaCGCU- -5'
5998 5' -54.6 NC_001806.1 + 70401 0.69 0.84207
Target:  5'- aCGC-CAuCGUgcugcUGCGGCuGCACAUGCGc -3'
miRNA:   3'- -GCGcGU-GCAa----ACGUCG-CGUGUACGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.