miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 41693 0.75 0.366581
Target:  5'- -gGCGGCGUGCcgcccgccgugUCCUCCCCGggacugGCGGGCg -3'
miRNA:   3'- ggUGCUGUACG-----------AGGGGGGGC------UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 42580 0.68 0.737825
Target:  5'- cCCAgGgACGUGCgCCCCa-CGAgCGAGCg -3'
miRNA:   3'- -GGUgC-UGUACGaGGGGggGCU-GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 45099 0.67 0.774801
Target:  5'- gCACGAC----UCCgCCCCCG-CGAGUa -3'
miRNA:   3'- gGUGCUGuacgAGG-GGGGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 46205 0.66 0.826537
Target:  5'- -gGCGACuaagGCcCCCgcggCCCCGGCG-GCg -3'
miRNA:   3'- ggUGCUGua--CGaGGG----GGGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 46381 0.67 0.801312
Target:  5'- aCGCGcCAUGgaCCCCCCgggUGGCcGGCu -3'
miRNA:   3'- gGUGCuGUACgaGGGGGG---GCUGcUCG- -5'
5999 5' -58.7 NC_001806.1 + 46653 0.66 0.833823
Target:  5'- uCUGCGGCGUcGCgCCCCaCCGAgcgaccuCGAGCc -3'
miRNA:   3'- -GGUGCUGUA-CGaGGGGgGGCU-------GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 51362 0.66 0.809873
Target:  5'- uCUuCGGCGggugucUGCUCCCCaCCCcgGAgGGGCu -3'
miRNA:   3'- -GGuGCUGU------ACGAGGGG-GGG--CUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 52544 0.66 0.84254
Target:  5'- -gACGACGUGgUCCgcggggccuCCCCCgGACGAcaugGCc -3'
miRNA:   3'- ggUGCUGUACgAGG---------GGGGG-CUGCU----CG- -5'
5999 5' -58.7 NC_001806.1 + 52884 0.71 0.552092
Target:  5'- gCgGCGACGUGCcCCUCCucguCCGGCGcGCg -3'
miRNA:   3'- -GgUGCUGUACGaGGGGG----GGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 53052 0.7 0.629636
Target:  5'- cCCGCGAacgGCacgCCCCCUacgaggaCGACGAGUc -3'
miRNA:   3'- -GGUGCUguaCGa--GGGGGG-------GCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 55262 0.67 0.801312
Target:  5'- cCCG-GGCcgGC-CCCCUCCGcccaGAGCa -3'
miRNA:   3'- -GGUgCUGuaCGaGGGGGGGCug--CUCG- -5'
5999 5' -58.7 NC_001806.1 + 55896 0.68 0.737825
Target:  5'- gCC-CGACGc-CUCCCCCUCG-CGAGg -3'
miRNA:   3'- -GGuGCUGUacGAGGGGGGGCuGCUCg -5'
5999 5' -58.7 NC_001806.1 + 58403 0.7 0.640516
Target:  5'- -gACGACAcGC-CCUCCUCG-CGGGCa -3'
miRNA:   3'- ggUGCUGUaCGaGGGGGGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 60400 0.68 0.709161
Target:  5'- aCugGACccccccgaGUcGCUCUCagaCCCGGCGGGCc -3'
miRNA:   3'- gGugCUG--------UA-CGAGGGg--GGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 65209 0.72 0.504468
Target:  5'- aCugGAUccccCUCCCCCCCGAauaccgcaGAGCg -3'
miRNA:   3'- gGugCUGuac-GAGGGGGGGCUg-------CUCG- -5'
5999 5' -58.7 NC_001806.1 + 65366 0.67 0.801312
Target:  5'- -aGCGACGUgggGUUCCCCCgaaugccaCGACG-GCg -3'
miRNA:   3'- ggUGCUGUA---CGAGGGGGg-------GCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 66638 0.69 0.650402
Target:  5'- uCCAgGGCcgGCUCCaaCCCGcGCGGGg -3'
miRNA:   3'- -GGUgCUGuaCGAGGggGGGC-UGCUCg -5'
5999 5' -58.7 NC_001806.1 + 67120 0.69 0.670125
Target:  5'- cCCGCGcGCGUGCaCCCgcucucggcucgCCCCGACcccaGGGCg -3'
miRNA:   3'- -GGUGC-UGUACGaGGG------------GGGGCUG----CUCG- -5'
5999 5' -58.7 NC_001806.1 + 70020 0.66 0.809873
Target:  5'- gCGCGGCcuaccUUCCCCgCCCGGuCGAGUu -3'
miRNA:   3'- gGUGCUGuac--GAGGGG-GGGCU-GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 73266 0.66 0.837812
Target:  5'- gCCACGGCgguuaaguucaccgcGUGCUCCgCCgCCCuggcccGCGAGg -3'
miRNA:   3'- -GGUGCUG---------------UACGAGG-GG-GGGc-----UGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.