miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 24057 0.67 0.756519
Target:  5'- aUugGACcgGCg--CCCCCGACGugucGGCg -3'
miRNA:   3'- gGugCUGuaCGaggGGGGGCUGC----UCG- -5'
5999 5' -58.7 NC_001806.1 + 24383 0.66 0.818284
Target:  5'- gCCGCGcACGcGCgCCUguaCCCCGACGcGCc -3'
miRNA:   3'- -GGUGC-UGUaCGaGGG---GGGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 25477 0.69 0.679947
Target:  5'- -gGCGGCAcugagguagagaUGCccgaaCCCCCCCGAgGgAGCg -3'
miRNA:   3'- ggUGCUGU------------ACGa----GGGGGGGCUgC-UCG- -5'
5999 5' -58.7 NC_001806.1 + 25921 0.67 0.783768
Target:  5'- -gGCGGCGUGCgCgCgCgCGGCGGGCg -3'
miRNA:   3'- ggUGCUGUACGaGgGgGgGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 26882 0.68 0.709161
Target:  5'- cCCGCGACccccGCga-CCCCCGcGCGGGUg -3'
miRNA:   3'- -GGUGCUGua--CGaggGGGGGC-UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 28121 0.66 0.818284
Target:  5'- cCCAUGGa--GC-CCCgCCCCGgaGCGAGUa -3'
miRNA:   3'- -GGUGCUguaCGaGGG-GGGGC--UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 29171 0.68 0.746284
Target:  5'- aCCcCGGCAguUGCgggggcgCCCCCCCucgagagGACGGGg -3'
miRNA:   3'- -GGuGCUGU--ACGa------GGGGGGG-------CUGCUCg -5'
5999 5' -58.7 NC_001806.1 + 29791 0.74 0.390421
Target:  5'- cCCACG-CAgagGCgccgccgcgCCCCCCgUGACGGGCg -3'
miRNA:   3'- -GGUGCuGUa--CGa--------GGGGGG-GCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 29855 0.68 0.722619
Target:  5'- gCCGCGGCucggacaGCgCCCCCCuCGGCGcccaucgggccacacGGCa -3'
miRNA:   3'- -GGUGCUGua-----CGaGGGGGG-GCUGC---------------UCG- -5'
5999 5' -58.7 NC_001806.1 + 29933 0.68 0.728345
Target:  5'- -aGCGGCGgggcgGCUCCCgCCagucGCGAGCc -3'
miRNA:   3'- ggUGCUGUa----CGAGGGgGGgc--UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 29970 0.66 0.809873
Target:  5'- gCCGCGGgGgGCgucuggCCCCUCCGGgGGGg -3'
miRNA:   3'- -GGUGCUgUaCGa-----GGGGGGGCUgCUCg -5'
5999 5' -58.7 NC_001806.1 + 30148 0.72 0.523324
Target:  5'- cCCGCGGCGcccaugccagGCUCcgCCCCCCGcccCGGGCc -3'
miRNA:   3'- -GGUGCUGUa---------CGAG--GGGGGGCu--GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 30452 0.73 0.432333
Target:  5'- cCCGCGGCGccGC-CCCCUCCGGCGccGCc -3'
miRNA:   3'- -GGUGCUGUa-CGaGGGGGGGCUGCu-CG- -5'
5999 5' -58.7 NC_001806.1 + 30648 0.66 0.845657
Target:  5'- gCGCGGCcagggugggcccgGgaCCCCCCUGACGuccucGGCg -3'
miRNA:   3'- gGUGCUGua-----------CgaGGGGGGGCUGC-----UCG- -5'
5999 5' -58.7 NC_001806.1 + 31126 0.68 0.699473
Target:  5'- gCCGCcGCAcccUGCUCCCCgagaCCG-CGGGUa -3'
miRNA:   3'- -GGUGcUGU---ACGAGGGGg---GGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 31159 0.78 0.251051
Target:  5'- aCCACGugAUGCcCCCCgaguaCCCGACG-GCc -3'
miRNA:   3'- -GGUGCugUACGaGGGG-----GGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 32790 0.68 0.747219
Target:  5'- -aACGACAccgGggCgCCCUCGACGAGUg -3'
miRNA:   3'- ggUGCUGUa--CgaGgGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 38392 0.67 0.756519
Target:  5'- gUCGCGGCG-GCUCUCCgCCGGCucGGGg -3'
miRNA:   3'- -GGUGCUGUaCGAGGGGgGGCUG--CUCg -5'
5999 5' -58.7 NC_001806.1 + 41342 0.68 0.71302
Target:  5'- uUCACGuACAU-CUgCCCCCCGGCauccaggccgccaggGGGCa -3'
miRNA:   3'- -GGUGC-UGUAcGAgGGGGGGCUG---------------CUCG- -5'
5999 5' -58.7 NC_001806.1 + 41526 0.66 0.84254
Target:  5'- gCGCGGCAaaUGC-CUgUCCCGugGGGa -3'
miRNA:   3'- gGUGCUGU--ACGaGGgGGGGCugCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.