miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 2017 0.71 0.542445
Target:  5'- gCCGCGACAccGCgggCCCgUCGGCGGGCc -3'
miRNA:   3'- -GGUGCUGUa-CGag-GGGgGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 2293 0.67 0.765715
Target:  5'- aCCACu-CcgGCggCCCCCCCGA--GGCc -3'
miRNA:   3'- -GGUGcuGuaCGa-GGGGGGGCUgcUCG- -5'
5999 5' -58.7 NC_001806.1 + 3129 0.7 0.591137
Target:  5'- cCCGCGGCAgcGCggggCCCagggCCCCGGCGAccagGCu -3'
miRNA:   3'- -GGUGCUGUa-CGa---GGG----GGGGCUGCU----CG- -5'
5999 5' -58.7 NC_001806.1 + 3572 0.7 0.630625
Target:  5'- cCCAgGGCG-GCgaggaUCCCCgcggcgccguaCCCGGCGGGCa -3'
miRNA:   3'- -GGUgCUGUaCG-----AGGGG-----------GGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 4954 0.69 0.650402
Target:  5'- gCCGCGGgGgccCUCCCgUCCCGcCGGGCg -3'
miRNA:   3'- -GGUGCUgUac-GAGGG-GGGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 5354 0.67 0.792608
Target:  5'- uCCGCGuAUcgGCgUCCCggCgCGGCGAGCg -3'
miRNA:   3'- -GGUGC-UGuaCG-AGGGg-GgGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 5517 0.75 0.329128
Target:  5'- gCCGcCGGCcccccgCCCCCCCGGCGGGCc -3'
miRNA:   3'- -GGU-GCUGuacga-GGGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 5912 0.68 0.736881
Target:  5'- cCCGCcu--UGCcgCCCCCCCauuggccGGCGGGCg -3'
miRNA:   3'- -GGUGcuguACGa-GGGGGGG-------CUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 6972 0.74 0.39859
Target:  5'- cUCugGGCggaggGUGUUCCCCCCCguggcucucgaGAUGAGCc -3'
miRNA:   3'- -GGugCUG-----UACGAGGGGGGG-----------CUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 7122 0.66 0.826537
Target:  5'- cCCGCG-CAUGauCUCCggaCCCCCGcaACGGGg -3'
miRNA:   3'- -GGUGCuGUAC--GAGG---GGGGGC--UGCUCg -5'
5999 5' -58.7 NC_001806.1 + 7377 0.67 0.778403
Target:  5'- uCCACGACAaccccgGuCUCCCagggagccccggucuCCCCGG-GAGCc -3'
miRNA:   3'- -GGUGCUGUa-----C-GAGGG---------------GGGGCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 7495 0.74 0.374415
Target:  5'- cCCG-GGCAaGUaugCCCCCCUGGCGAGCc -3'
miRNA:   3'- -GGUgCUGUaCGa--GGGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 9274 0.66 0.850277
Target:  5'- aUCGCGAUuaGCUCgUCUCCGACGuccaccucgccGGCg -3'
miRNA:   3'- -GGUGCUGuaCGAGgGGGGGCUGC-----------UCG- -5'
5999 5' -58.7 NC_001806.1 + 9554 0.66 0.850277
Target:  5'- aCCugGuCGcGUUCUCCCUCGcugucCGAGCu -3'
miRNA:   3'- -GGugCuGUaCGAGGGGGGGCu----GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 19619 0.75 0.351254
Target:  5'- aCCACagug-GCUUCCCCCCGcccgACGAGCa -3'
miRNA:   3'- -GGUGcuguaCGAGGGGGGGC----UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 21152 0.69 0.659288
Target:  5'- cCCAcCGACggGCcgccgCCCaCCCCGAgcccagaccgcgaCGAGCg -3'
miRNA:   3'- -GGU-GCUGuaCGa----GGG-GGGGCU-------------GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 21267 0.71 0.560818
Target:  5'- cCCACGACcucgacgacgcccgGCgggacgggagggCCCCCgCGGCGGGCa -3'
miRNA:   3'- -GGUGCUGua------------CGa-----------GGGGGgGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 21789 0.67 0.783768
Target:  5'- gCGCGGCGccgGCagCCCCCgGGCGGacGCc -3'
miRNA:   3'- gGUGCUGUa--CGagGGGGGgCUGCU--CG- -5'
5999 5' -58.7 NC_001806.1 + 21939 0.68 0.706261
Target:  5'- gCCGCGACGccacggGC-CCUucacggccgggcagCCCCGGCGGGUc -3'
miRNA:   3'- -GGUGCUGUa-----CGaGGG--------------GGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 22705 0.71 0.581319
Target:  5'- gCCGCG-CccGcCUCCCCCgCGGgGGGCg -3'
miRNA:   3'- -GGUGCuGuaC-GAGGGGGgGCUgCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.