miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 133742 0.9 0.039784
Target:  5'- cCCGCGGCcccuuGUGCUCCCCCCCGugGAcuGCg -3'
miRNA:   3'- -GGUGCUG-----UACGAGGGGGGGCugCU--CG- -5'
5999 5' -58.7 NC_001806.1 + 108709 0.8 0.171389
Target:  5'- aCGCGACGUGCUcgggggagaucaCCCCCCCGGgGAcgGCg -3'
miRNA:   3'- gGUGCUGUACGA------------GGGGGGGCUgCU--CG- -5'
5999 5' -58.7 NC_001806.1 + 31159 0.78 0.251051
Target:  5'- aCCACGugAUGCcCCCCgaguaCCCGACG-GCc -3'
miRNA:   3'- -GGUGCugUACGaGGGG-----GGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 107878 0.76 0.314958
Target:  5'- aCCGCGACAUGCgaaggCUCCaCCCGGgauauCGAGUc -3'
miRNA:   3'- -GGUGCUGUACGa----GGGG-GGGCU-----GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 5517 0.75 0.329128
Target:  5'- gCCGcCGGCcccccgCCCCCCCGGCGGGCc -3'
miRNA:   3'- -GGU-GCUGuacga-GGGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 147667 0.75 0.343763
Target:  5'- -gGCGGCcgGCUCCgCCCCGG-GGGCc -3'
miRNA:   3'- ggUGCUGuaCGAGGgGGGGCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 19619 0.75 0.351254
Target:  5'- aCCACagug-GCUUCCCCCCGcccgACGAGCa -3'
miRNA:   3'- -GGUGcuguaCGAGGGGGGGC----UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 74683 0.75 0.35886
Target:  5'- -gACGGCAgaGCUCgCCCCCGAUGcGCg -3'
miRNA:   3'- ggUGCUGUa-CGAGgGGGGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 41693 0.75 0.366581
Target:  5'- -gGCGGCGUGCcgcccgccgugUCCUCCCCGggacugGCGGGCg -3'
miRNA:   3'- ggUGCUGUACG-----------AGGGGGGGC------UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 7495 0.74 0.374415
Target:  5'- cCCG-GGCAaGUaugCCCCCCUGGCGAGCc -3'
miRNA:   3'- -GGUgCUGUaCGa--GGGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 29791 0.74 0.390421
Target:  5'- cCCACG-CAgagGCgccgccgcgCCCCCCgUGACGGGCg -3'
miRNA:   3'- -GGUGCuGUa--CGa--------GGGGGG-GCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 6972 0.74 0.39859
Target:  5'- cUCugGGCggaggGUGUUCCCCCCCguggcucucgaGAUGAGCc -3'
miRNA:   3'- -GGugCUG-----UACGAGGGGGGG-----------CUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 148809 0.74 0.406867
Target:  5'- cUCGCGGgGgggGCUCCCCCCCGA-GAccGCc -3'
miRNA:   3'- -GGUGCUgUa--CGAGGGGGGGCUgCU--CG- -5'
5999 5' -58.7 NC_001806.1 + 148493 0.74 0.406867
Target:  5'- uCCACGGcCGUGC-CCgCCCUGACG-GCc -3'
miRNA:   3'- -GGUGCU-GUACGaGGgGGGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 30452 0.73 0.432333
Target:  5'- cCCGCGGCGccGC-CCCCUCCGGCGccGCc -3'
miRNA:   3'- -GGUGCUGUa-CGaGGGGGGGCUGCu-CG- -5'
5999 5' -58.7 NC_001806.1 + 83014 0.73 0.449818
Target:  5'- gCCAUGGCAacUUCgCCCCCCGggguccugGCGAGCg -3'
miRNA:   3'- -GGUGCUGUacGAG-GGGGGGC--------UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 140324 0.73 0.449818
Target:  5'- aCC-CGACAcugaaaUGCcCCCCCCCccuuGCGGGCg -3'
miRNA:   3'- -GGuGCUGU------ACGaGGGGGGGc---UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 102796 0.73 0.453362
Target:  5'- uCCugGAUAgUGCgguaCCaggucccgaacaccaCCCCCGACGAGCc -3'
miRNA:   3'- -GGugCUGU-ACGa---GG---------------GGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 111419 0.73 0.458706
Target:  5'- gCCGCaGCcuucucccgGUGCcuuUCCCCCCCGACcGGCa -3'
miRNA:   3'- -GGUGcUG---------UACG---AGGGGGGGCUGcUCG- -5'
5999 5' -58.7 NC_001806.1 + 149263 0.73 0.467686
Target:  5'- cCCACGGCG---UCCCCCaaauaUGGCGGGCg -3'
miRNA:   3'- -GGUGCUGUacgAGGGGGg----GCUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.