miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 65209 0.72 0.504468
Target:  5'- aCugGAUccccCUCCCCCCCGAauaccgcaGAGCg -3'
miRNA:   3'- gGugCUGuac-GAGGGGGGGCUg-------CUCG- -5'
5999 5' -58.7 NC_001806.1 + 30148 0.72 0.523324
Target:  5'- cCCGCGGCGcccaugccagGCUCcgCCCCCCGcccCGGGCc -3'
miRNA:   3'- -GGUGCUGUa---------CGAG--GGGGGGCu--GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 142060 0.71 0.531898
Target:  5'- -gGCGGCcgGUUCgCCCCCCGAacccggaCGGGUu -3'
miRNA:   3'- ggUGCUGuaCGAG-GGGGGGCU-------GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 87412 0.71 0.532854
Target:  5'- gCUugGGCGc-CUCCCCCCCGGCGc-- -3'
miRNA:   3'- -GGugCUGUacGAGGGGGGGCUGCucg -5'
5999 5' -58.7 NC_001806.1 + 2017 0.71 0.542445
Target:  5'- gCCGCGACAccGCgggCCCgUCGGCGGGCc -3'
miRNA:   3'- -GGUGCUGUa-CGag-GGGgGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 112671 0.71 0.551125
Target:  5'- gCugGACGaGCUCgagagcgCCCCCCaGACGAcGCg -3'
miRNA:   3'- gGugCUGUaCGAG-------GGGGGG-CUGCU-CG- -5'
5999 5' -58.7 NC_001806.1 + 52884 0.71 0.552092
Target:  5'- gCgGCGACGUGCcCCUCCucguCCGGCGcGCg -3'
miRNA:   3'- -GgUGCUGUACGaGGGGG----GGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 75937 0.71 0.552092
Target:  5'- gCCACccCAUGCUCCCCCCgcuCGcAGCc -3'
miRNA:   3'- -GGUGcuGUACGAGGGGGGgcuGC-UCG- -5'
5999 5' -58.7 NC_001806.1 + 21267 0.71 0.560818
Target:  5'- cCCACGACcucgacgacgcccgGCgggacgggagggCCCCCgCGGCGGGCa -3'
miRNA:   3'- -GGUGCUGua------------CGa-----------GGGGGgGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 131710 0.71 0.56179
Target:  5'- aCGCGGUAUgGCUgCCCCCCCGcgcucCGAGUa -3'
miRNA:   3'- gGUGCUGUA-CGA-GGGGGGGCu----GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 74874 0.71 0.56179
Target:  5'- -gGCGACccugcggGcCUCCCUgCCGGCGGGCu -3'
miRNA:   3'- ggUGCUGua-----C-GAGGGGgGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 100104 0.71 0.56179
Target:  5'- cCCGCGGCcgGCUgaccgCCCgCCUGGCGGuccGCg -3'
miRNA:   3'- -GGUGCUGuaCGA-----GGGgGGGCUGCU---CG- -5'
5999 5' -58.7 NC_001806.1 + 79542 0.71 0.571535
Target:  5'- aCGCGGCcgGCgcccgugggCCCCCgCGACGAcuuccgGCg -3'
miRNA:   3'- gGUGCUGuaCGa--------GGGGGgGCUGCU------CG- -5'
5999 5' -58.7 NC_001806.1 + 22705 0.71 0.581319
Target:  5'- gCCGCG-CccGcCUCCCCCgCGGgGGGCg -3'
miRNA:   3'- -GGUGCuGuaC-GAGGGGGgGCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 3129 0.7 0.591137
Target:  5'- cCCGCGGCAgcGCggggCCCagggCCCCGGCGAccagGCu -3'
miRNA:   3'- -GGUGCUGUa-CGa---GGG----GGGGCUGCU----CG- -5'
5999 5' -58.7 NC_001806.1 + 106337 0.7 0.600983
Target:  5'- gCCGCGugAUaCaccgCCCCCCCGACcgccgguugGGGCc -3'
miRNA:   3'- -GGUGCugUAcGa---GGGGGGGCUG---------CUCG- -5'
5999 5' -58.7 NC_001806.1 + 150217 0.7 0.600983
Target:  5'- cCCAUuaGCAUGC-CCCUCCCGcCGAcGCa -3'
miRNA:   3'- -GGUGc-UGUACGaGGGGGGGCuGCU-CG- -5'
5999 5' -58.7 NC_001806.1 + 122435 0.7 0.610851
Target:  5'- --uUGACcUGCUCCgcguggUCCCCGAgGAGCa -3'
miRNA:   3'- gguGCUGuACGAGG------GGGGGCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 138795 0.7 0.620734
Target:  5'- gC-CGACGcagGCg--CCCCCGGCGAGCg -3'
miRNA:   3'- gGuGCUGUa--CGaggGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 53052 0.7 0.629636
Target:  5'- cCCGCGAacgGCacgCCCCCUacgaggaCGACGAGUc -3'
miRNA:   3'- -GGUGCUguaCGa--GGGGGG-------GCUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.