Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5999 | 5' | -58.7 | NC_001806.1 | + | 141753 | 0.66 | 0.850277 |
Target: 5'- uCCACGAaaacacaUCCUCCCgCGGCG-GCa -3' miRNA: 3'- -GGUGCUguacg--AGGGGGG-GCUGCuCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 9554 | 0.66 | 0.850277 |
Target: 5'- aCCugGuCGcGUUCUCCCUCGcugucCGAGCu -3' miRNA: 3'- -GGugCuGUaCGAGGGGGGGCu----GCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 115007 | 0.66 | 0.849511 |
Target: 5'- aCCugGGCcgcgggGCUCCCCCUcuccuggacaacgCGGC-AGCc -3' miRNA: 3'- -GGugCUGua----CGAGGGGGG-------------GCUGcUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 30648 | 0.66 | 0.845657 |
Target: 5'- gCGCGGCcagggugggcccgGgaCCCCCCUGACGuccucGGCg -3' miRNA: 3'- gGUGCUGua-----------CgaGGGGGGGCUGC-----UCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 88954 | 0.66 | 0.84254 |
Target: 5'- gCCGgGGCGUGgUCCacgccgCCCCacaggcGCGAGCg -3' miRNA: 3'- -GGUgCUGUACgAGGg-----GGGGc-----UGCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 73266 | 0.66 | 0.837812 |
Target: 5'- gCCACGGCgguuaaguucaccgcGUGCUCCgCCgCCCuggcccGCGAGg -3' miRNA: 3'- -GGUGCUG---------------UACGAGG-GG-GGGc-----UGCUCg -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 99974 | 0.66 | 0.841756 |
Target: 5'- gCGCGGCGcGCcucgagCCUCCCCGggguaguACGGGUa -3' miRNA: 3'- gGUGCUGUaCGa-----GGGGGGGC-------UGCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 52544 | 0.66 | 0.84254 |
Target: 5'- -gACGACGUGgUCCgcggggccuCCCCCgGACGAcaugGCc -3' miRNA: 3'- ggUGCUGUACgAGG---------GGGGG-CUGCU----CG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 114568 | 0.66 | 0.84254 |
Target: 5'- gUCGCGGCAgGUcccccuggUCCCCCCGGCucuggGGGCc -3' miRNA: 3'- -GGUGCUGUaCGa-------GGGGGGGCUG-----CUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 41526 | 0.66 | 0.84254 |
Target: 5'- gCGCGGCAaaUGC-CUgUCCCGugGGGa -3' miRNA: 3'- gGUGCUGU--ACGaGGgGGGGCugCUCg -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 80315 | 0.66 | 0.84254 |
Target: 5'- cCCACcACAucUGCgCgCCCCCGG-GGGCa -3' miRNA: 3'- -GGUGcUGU--ACGaGgGGGGGCUgCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 25921 | 0.67 | 0.783768 |
Target: 5'- -gGCGGCGUGCgCgCgCgCGGCGGGCg -3' miRNA: 3'- ggUGCUGUACGaGgGgGgGCUGCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 84546 | 0.67 | 0.783768 |
Target: 5'- cCCugGGuucuguUcgGCcaUCCCCccgccacccauCCCGACGAGCu -3' miRNA: 3'- -GGugCU------GuaCG--AGGGG-----------GGGCUGCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 143387 | 0.67 | 0.79173 |
Target: 5'- aCgGCGACAacGCUCCCCggcggCCGggucgcggcucuuACGAGCg -3' miRNA: 3'- -GgUGCUGUa-CGAGGGGg----GGC-------------UGCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 112375 | 0.67 | 0.792608 |
Target: 5'- aCCACGGCcacGCagCCCUCCGugGccguGCc -3' miRNA: 3'- -GGUGCUGua-CGagGGGGGGCugCu---CG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 5354 | 0.67 | 0.792608 |
Target: 5'- uCCGCGuAUcgGCgUCCCggCgCGGCGAGCg -3' miRNA: 3'- -GGUGC-UGuaCG-AGGGg-GgGCUGCUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 80186 | 0.67 | 0.800448 |
Target: 5'- cCCGCGGuccaaccCGUcGCcCCgCCCCCGACGucaGGCc -3' miRNA: 3'- -GGUGCU-------GUA-CGaGG-GGGGGCUGC---UCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 46381 | 0.67 | 0.801312 |
Target: 5'- aCGCGcCAUGgaCCCCCCgggUGGCcGGCu -3' miRNA: 3'- gGUGCuGUACgaGGGGGG---GCUGcUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 55262 | 0.67 | 0.801312 |
Target: 5'- cCCG-GGCcgGC-CCCCUCCGcccaGAGCa -3' miRNA: 3'- -GGUgCUGuaCGaGGGGGGGCug--CUCG- -5' |
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5999 | 5' | -58.7 | NC_001806.1 | + | 21789 | 0.67 | 0.783768 |
Target: 5'- gCGCGGCGccgGCagCCCCCgGGCGGacGCc -3' miRNA: 3'- gGUGCUGUa--CGagGGGGGgCUGCU--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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