miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 119943 0.66 0.826537
Target:  5'- aCGCGuCGUGCgCCCCcaccagcugucuCCCGcUGGGCa -3'
miRNA:   3'- gGUGCuGUACGaGGGG------------GGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 28121 0.66 0.818284
Target:  5'- cCCAUGGa--GC-CCCgCCCCGgaGCGAGUa -3'
miRNA:   3'- -GGUGCUguaCGaGGG-GGGGC--UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 24383 0.66 0.818284
Target:  5'- gCCGCGcACGcGCgCCUguaCCCCGACGcGCc -3'
miRNA:   3'- -GGUGC-UGUaCGaGGG---GGGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 105996 0.66 0.815777
Target:  5'- aCUACGGCAU-CUCUgCCCCuucuucgcugguacGAgGAGCg -3'
miRNA:   3'- -GGUGCUGUAcGAGGgGGGG--------------CUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 83224 0.66 0.813256
Target:  5'- gCCGcCGACGUGgucaccgCCCCCUCaagggcccgcgggggGGCGGGCg -3'
miRNA:   3'- -GGU-GCUGUACga-----GGGGGGG---------------CUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 51362 0.66 0.809873
Target:  5'- uCUuCGGCGggugucUGCUCCCCaCCCcgGAgGGGCu -3'
miRNA:   3'- -GGuGCUGU------ACGAGGGG-GGG--CUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 78281 0.66 0.809873
Target:  5'- gCCGCGGCAaguUGUccgaaaccgaCCCCCUGGCGcccuGGCg -3'
miRNA:   3'- -GGUGCUGU---ACGag--------GGGGGGCUGC----UCG- -5'
5999 5' -58.7 NC_001806.1 + 29970 0.66 0.809873
Target:  5'- gCCGCGGgGgGCgucuggCCCCUCCGGgGGGg -3'
miRNA:   3'- -GGUGCUgUaCGa-----GGGGGGGCUgCUCg -5'
5999 5' -58.7 NC_001806.1 + 70020 0.66 0.809873
Target:  5'- gCGCGGCcuaccUUCCCCgCCCGGuCGAGUu -3'
miRNA:   3'- gGUGCUGuac--GAGGGG-GGGCU-GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 147313 0.66 0.809873
Target:  5'- cCCACccuGGCc-GCgCCCCCCCGGCccuGAGUc -3'
miRNA:   3'- -GGUG---CUGuaCGaGGGGGGGCUG---CUCG- -5'
5999 5' -58.7 NC_001806.1 + 111935 0.66 0.809873
Target:  5'- cCCGCGACG-GC-CCgCaCCCCauCGAGCa -3'
miRNA:   3'- -GGUGCUGUaCGaGG-G-GGGGcuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 65366 0.67 0.801312
Target:  5'- -aGCGACGUgggGUUCCCCCgaaugccaCGACG-GCg -3'
miRNA:   3'- ggUGCUGUA---CGAGGGGGg-------GCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 55262 0.67 0.801312
Target:  5'- cCCG-GGCcgGC-CCCCUCCGcccaGAGCa -3'
miRNA:   3'- -GGUgCUGuaCGaGGGGGGGCug--CUCG- -5'
5999 5' -58.7 NC_001806.1 + 46381 0.67 0.801312
Target:  5'- aCGCGcCAUGgaCCCCCCgggUGGCcGGCu -3'
miRNA:   3'- gGUGCuGUACgaGGGGGG---GCUGcUCG- -5'
5999 5' -58.7 NC_001806.1 + 80186 0.67 0.800448
Target:  5'- cCCGCGGuccaaccCGUcGCcCCgCCCCCGACGucaGGCc -3'
miRNA:   3'- -GGUGCU-------GUA-CGaGG-GGGGGCUGC---UCG- -5'
5999 5' -58.7 NC_001806.1 + 5354 0.67 0.792608
Target:  5'- uCCGCGuAUcgGCgUCCCggCgCGGCGAGCg -3'
miRNA:   3'- -GGUGC-UGuaCG-AGGGg-GgGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 112375 0.67 0.792608
Target:  5'- aCCACGGCcacGCagCCCUCCGugGccguGCc -3'
miRNA:   3'- -GGUGCUGua-CGagGGGGGGCugCu---CG- -5'
5999 5' -58.7 NC_001806.1 + 143387 0.67 0.79173
Target:  5'- aCgGCGACAacGCUCCCCggcggCCGggucgcggcucuuACGAGCg -3'
miRNA:   3'- -GgUGCUGUa-CGAGGGGg----GGC-------------UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 25921 0.67 0.783768
Target:  5'- -gGCGGCGUGCgCgCgCgCGGCGGGCg -3'
miRNA:   3'- ggUGCUGUACGaGgGgGgGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 21789 0.67 0.783768
Target:  5'- gCGCGGCGccgGCagCCCCCgGGCGGacGCc -3'
miRNA:   3'- gGUGCUGUa--CGagGGGGGgCUGCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.