miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 21789 0.67 0.783768
Target:  5'- gCGCGGCGccgGCagCCCCCgGGCGGacGCc -3'
miRNA:   3'- gGUGCUGUa--CGagGGGGGgCUGCU--CG- -5'
5999 5' -58.7 NC_001806.1 + 96710 0.67 0.783768
Target:  5'- uUACG-UGUGC-CCaCCCCCcACGGGCg -3'
miRNA:   3'- gGUGCuGUACGaGG-GGGGGcUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 7377 0.67 0.778403
Target:  5'- uCCACGACAaccccgGuCUCCCagggagccccggucuCCCCGG-GAGCc -3'
miRNA:   3'- -GGUGCUGUa-----C-GAGGG---------------GGGGCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 45099 0.67 0.774801
Target:  5'- gCACGAC----UCCgCCCCCG-CGAGUa -3'
miRNA:   3'- gGUGCUGuacgAGG-GGGGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 119092 0.67 0.774801
Target:  5'- uUACGACGaGCucgUCCCCCCCaacACGcGCu -3'
miRNA:   3'- gGUGCUGUaCG---AGGGGGGGc--UGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 73971 0.67 0.774801
Target:  5'- cCCuCGGCGuaaUGC-CCgCCCCGGCcgGGGCg -3'
miRNA:   3'- -GGuGCUGU---ACGaGGgGGGGCUG--CUCG- -5'
5999 5' -58.7 NC_001806.1 + 2293 0.67 0.765715
Target:  5'- aCCACu-CcgGCggCCCCCCCGA--GGCc -3'
miRNA:   3'- -GGUGcuGuaCGa-GGGGGGGCUgcUCG- -5'
5999 5' -58.7 NC_001806.1 + 24057 0.67 0.756519
Target:  5'- aUugGACcgGCg--CCCCCGACGugucGGCg -3'
miRNA:   3'- gGugCUGuaCGaggGGGGGCUGC----UCG- -5'
5999 5' -58.7 NC_001806.1 + 38392 0.67 0.756519
Target:  5'- gUCGCGGCG-GCUCUCCgCCGGCucGGGg -3'
miRNA:   3'- -GGUGCUGUaCGAGGGGgGGCUG--CUCg -5'
5999 5' -58.7 NC_001806.1 + 109212 0.68 0.747219
Target:  5'- cCCACcACA-GCUCCCUUagCGugGGGCc -3'
miRNA:   3'- -GGUGcUGUaCGAGGGGGg-GCugCUCG- -5'
5999 5' -58.7 NC_001806.1 + 32790 0.68 0.747219
Target:  5'- -aACGACAccgGggCgCCCUCGACGAGUg -3'
miRNA:   3'- ggUGCUGUa--CgaGgGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 29171 0.68 0.746284
Target:  5'- aCCcCGGCAguUGCgggggcgCCCCCCCucgagagGACGGGg -3'
miRNA:   3'- -GGuGCUGU--ACGa------GGGGGGG-------CUGCUCg -5'
5999 5' -58.7 NC_001806.1 + 134195 0.68 0.737825
Target:  5'- cCCA--GCA-GCUCCCCaugauCCCGGCGGGg -3'
miRNA:   3'- -GGUgcUGUaCGAGGGG-----GGGCUGCUCg -5'
5999 5' -58.7 NC_001806.1 + 42580 0.68 0.737825
Target:  5'- cCCAgGgACGUGCgCCCCa-CGAgCGAGCg -3'
miRNA:   3'- -GGUgC-UGUACGaGGGGggGCU-GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 55896 0.68 0.737825
Target:  5'- gCC-CGACGc-CUCCCCCUCG-CGAGg -3'
miRNA:   3'- -GGuGCUGUacGAGGGGGGGCuGCUCg -5'
5999 5' -58.7 NC_001806.1 + 84897 0.68 0.737825
Target:  5'- -gGCGugGUGCgucgggCCUCCCgGAaGAGCc -3'
miRNA:   3'- ggUGCugUACGa-----GGGGGGgCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 5912 0.68 0.736881
Target:  5'- cCCGCcu--UGCcgCCCCCCCauuggccGGCGGGCg -3'
miRNA:   3'- -GGUGcuguACGa-GGGGGGG-------CUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 29933 0.68 0.728345
Target:  5'- -aGCGGCGgggcgGCUCCCgCCagucGCGAGCc -3'
miRNA:   3'- ggUGCUGUa----CGAGGGgGGgc--UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 29855 0.68 0.722619
Target:  5'- gCCGCGGCucggacaGCgCCCCCCuCGGCGcccaucgggccacacGGCa -3'
miRNA:   3'- -GGUGCUGua-----CGaGGGGGG-GCUGC---------------UCG- -5'
5999 5' -58.7 NC_001806.1 + 144306 0.68 0.718788
Target:  5'- cCCGCGACAccC-CCCCCCCGccCGuGUg -3'
miRNA:   3'- -GGUGCUGUacGaGGGGGGGCu-GCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.