miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5999 5' -58.7 NC_001806.1 + 150217 0.7 0.600983
Target:  5'- cCCAUuaGCAUGC-CCCUCCCGcCGAcGCa -3'
miRNA:   3'- -GGUGc-UGUACGaGGGGGGGCuGCU-CG- -5'
5999 5' -58.7 NC_001806.1 + 149263 0.73 0.467686
Target:  5'- cCCACGGCG---UCCCCCaaauaUGGCGGGCg -3'
miRNA:   3'- -GGUGCUGUacgAGGGGGg----GCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 148809 0.74 0.406867
Target:  5'- cUCGCGGgGgggGCUCCCCCCCGA-GAccGCc -3'
miRNA:   3'- -GGUGCUgUa--CGAGGGGGGGCUgCU--CG- -5'
5999 5' -58.7 NC_001806.1 + 148493 0.74 0.406867
Target:  5'- uCCACGGcCGUGC-CCgCCCUGACG-GCc -3'
miRNA:   3'- -GGUGCU-GUACGaGGgGGGGCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 147667 0.75 0.343763
Target:  5'- -gGCGGCcgGCUCCgCCCCGG-GGGCc -3'
miRNA:   3'- ggUGCUGuaCGAGGgGGGGCUgCUCG- -5'
5999 5' -58.7 NC_001806.1 + 147313 0.66 0.809873
Target:  5'- cCCACccuGGCc-GCgCCCCCCCGGCccuGAGUc -3'
miRNA:   3'- -GGUG---CUGuaCGaGGGGGGGCUG---CUCG- -5'
5999 5' -58.7 NC_001806.1 + 147158 0.66 0.850277
Target:  5'- cCCAgGGCAccgacgGC-CCCgCCCGAgGAGg -3'
miRNA:   3'- -GGUgCUGUa-----CGaGGGgGGGCUgCUCg -5'
5999 5' -58.7 NC_001806.1 + 144636 0.69 0.660274
Target:  5'- uCgGCGACAUcCUCCCCCuaagcgCCGGCcGGCc -3'
miRNA:   3'- -GgUGCUGUAcGAGGGGG------GGCUGcUCG- -5'
5999 5' -58.7 NC_001806.1 + 144306 0.68 0.718788
Target:  5'- cCCGCGACAccC-CCCCCCCGccCGuGUg -3'
miRNA:   3'- -GGUGCUGUacGaGGGGGGGCu-GCuCG- -5'
5999 5' -58.7 NC_001806.1 + 143387 0.67 0.79173
Target:  5'- aCgGCGACAacGCUCCCCggcggCCGggucgcggcucuuACGAGCg -3'
miRNA:   3'- -GgUGCUGUa-CGAGGGGg----GGC-------------UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 142060 0.71 0.531898
Target:  5'- -gGCGGCcgGUUCgCCCCCCGAacccggaCGGGUu -3'
miRNA:   3'- ggUGCUGuaCGAG-GGGGGGCU-------GCUCG- -5'
5999 5' -58.7 NC_001806.1 + 141753 0.66 0.850277
Target:  5'- uCCACGAaaacacaUCCUCCCgCGGCG-GCa -3'
miRNA:   3'- -GGUGCUguacg--AGGGGGG-GCUGCuCG- -5'
5999 5' -58.7 NC_001806.1 + 140324 0.73 0.449818
Target:  5'- aCC-CGACAcugaaaUGCcCCCCCCCccuuGCGGGCg -3'
miRNA:   3'- -GGuGCUGU------ACGaGGGGGGGc---UGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 138795 0.7 0.620734
Target:  5'- gC-CGACGcagGCg--CCCCCGGCGAGCg -3'
miRNA:   3'- gGuGCUGUa--CGaggGGGGGCUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 134195 0.68 0.737825
Target:  5'- cCCA--GCA-GCUCCCCaugauCCCGGCGGGg -3'
miRNA:   3'- -GGUgcUGUaCGAGGGG-----GGGCUGCUCg -5'
5999 5' -58.7 NC_001806.1 + 133742 0.9 0.039784
Target:  5'- cCCGCGGCcccuuGUGCUCCCCCCCGugGAcuGCg -3'
miRNA:   3'- -GGUGCUG-----UACGAGGGGGGGCugCU--CG- -5'
5999 5' -58.7 NC_001806.1 + 133373 0.66 0.85332
Target:  5'- cCCGCGACAacacUGaccaucuugggggauUUCCUCUCCG-CGGGCc -3'
miRNA:   3'- -GGUGCUGU----AC---------------GAGGGGGGGCuGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 132710 0.69 0.679947
Target:  5'- gCCAgGGuCGUcCUCCCCCC--GCGAGCu -3'
miRNA:   3'- -GGUgCU-GUAcGAGGGGGGgcUGCUCG- -5'
5999 5' -58.7 NC_001806.1 + 131891 0.7 0.640516
Target:  5'- gCCGCGACGacgccgGCcgCCUCCCCGcugGAGCc -3'
miRNA:   3'- -GGUGCUGUa-----CGa-GGGGGGGCug-CUCG- -5'
5999 5' -58.7 NC_001806.1 + 131710 0.71 0.56179
Target:  5'- aCGCGGUAUgGCUgCCCCCCCGcgcucCGAGUa -3'
miRNA:   3'- gGUGCUGUA-CGA-GGGGGGGCu----GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.