Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6001 | 3' | -58.7 | NC_001806.1 | + | 3087 | 0.69 | 0.641181 |
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Target: 5'- gGUC-CGCgGCGGCGGCggccgcgGaGCUCgGCa -3' miRNA: 3'- gCAGaGCGgCGCUGUCGa------C-CGAGaCG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 4650 | 0.69 | 0.611082 |
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Target: 5'- aCGUCU--CCGCGGCGGCUgGGC-CgGCg -3' miRNA: 3'- -GCAGAgcGGCGCUGUCGA-CCGaGaCG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 139117 | 0.69 | 0.61008 |
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Target: 5'- cCGgCUCGCCGCG-CGGggGGCUgauguccgucgccCUGCa -3' miRNA: 3'- -GCaGAGCGGCGCuGUCgaCCGA-------------GACG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 50717 | 0.7 | 0.581119 |
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Target: 5'- uCGUCcUGCaGCGGCuGCUGGgCUUUGCc -3' miRNA: 3'- -GCAGaGCGgCGCUGuCGACC-GAGACG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 60036 | 0.7 | 0.571193 |
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Target: 5'- cCGUC-CGCCGCGcccucgaAGCcGGCcCUGCg -3' miRNA: 3'- -GCAGaGCGGCGCug-----UCGaCCGaGACG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 148107 | 0.72 | 0.456829 |
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Target: 5'- uGUCcgaGCCGCGGcCGGCUGGggggCUGCg -3' miRNA: 3'- gCAGag-CGGCGCU-GUCGACCga--GACG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 38068 | 0.73 | 0.412865 |
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Target: 5'- gCGUC-CGCCGCGGgcaGGCUgGGCUUUGg -3' miRNA: 3'- -GCAGaGCGGCGCUg--UCGA-CCGAGACg -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 103805 | 0.75 | 0.333256 |
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Target: 5'- gCGgcgC-CGCCGCGGCGGCgacgGGCUC-GCu -3' miRNA: 3'- -GCa--GaGCGGCGCUGUCGa---CCGAGaCG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 69259 | 0.77 | 0.241686 |
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Target: 5'- cCGcCggCGCCcagcaGCGGCuGCUGGCUCUGCu -3' miRNA: 3'- -GCaGa-GCGG-----CGCUGuCGACCGAGACG- -5' |
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| 6001 | 3' | -58.7 | NC_001806.1 | + | 21345 | 1.11 | 0.00118 |
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Target: 5'- cCGUCUCGCCGCGACAGCUGGCUCUGCu -3' miRNA: 3'- -GCAGAGCGGCGCUGUCGACCGAGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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