miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6001 5' -58.1 NC_001806.1 + 4418 0.71 0.5754
Target:  5'- cGGagAGGGGGGGUgGcCCGGGCGGg- -3'
miRNA:   3'- aCCa-UCUCCUCCGgCaGGCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 10393 0.75 0.366666
Target:  5'- gGGgcgGGGGGAGGCgGgagCCGGGgGGUCc -3'
miRNA:   3'- aCCa--UCUCCUCCGgCa--GGCCUgCUAG- -5'
6001 5' -58.1 NC_001806.1 + 11818 0.66 0.825149
Target:  5'- gGGUGGAGGuGGUgGUCgagggGGugGAg- -3'
miRNA:   3'- aCCAUCUCCuCCGgCAGg----CCugCUag -5'
6001 5' -58.1 NC_001806.1 + 15055 0.66 0.825149
Target:  5'- aUGGUGGGGGGuGUC-UUCGGGCGAc- -3'
miRNA:   3'- -ACCAUCUCCUcCGGcAGGCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 21380 1.08 0.00209
Target:  5'- aUGGUAGAGGAGGCCGUCCGGACGAUCc -3'
miRNA:   3'- -ACCAUCUCCUCCGGCAGGCCUGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 22142 0.68 0.744222
Target:  5'- aGGcGGAGGAGGCgCGacgCCGGuuCGAg- -3'
miRNA:   3'- aCCaUCUCCUCCG-GCa--GGCCu-GCUag -5'
6001 5' -58.1 NC_001806.1 + 23946 0.74 0.39923
Target:  5'- gGGgccuGGGGGGGCCG-CCGGAgUGGUCc -3'
miRNA:   3'- aCCau--CUCCUCCGGCaGGCCU-GCUAG- -5'
6001 5' -58.1 NC_001806.1 + 27026 0.7 0.585363
Target:  5'- gGGUGGcGGAGGCCGa--GG-CGGUCa -3'
miRNA:   3'- aCCAUCuCCUCCGGCaggCCuGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 29447 0.79 0.205935
Target:  5'- aGGccGAGGAGGCCGUCaGGGCGggCa -3'
miRNA:   3'- aCCauCUCCUCCGGCAGgCCUGCuaG- -5'
6001 5' -58.1 NC_001806.1 + 30032 0.66 0.849363
Target:  5'- aGGc-GGGGcGGCCGaggggCCGGACGGg- -3'
miRNA:   3'- aCCauCUCCuCCGGCa----GGCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 31371 0.69 0.645585
Target:  5'- gGGaGGGGGGGGUCGggcgCUGGGUGGUCu -3'
miRNA:   3'- aCCaUCUCCUCCGGCa---GGCCUGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 33647 0.69 0.65563
Target:  5'- cGGgcgGGGGGGGGgUGUCgCGGGCcGUCu -3'
miRNA:   3'- aCCa--UCUCCUCCgGCAG-GCCUGcUAG- -5'
6001 5' -58.1 NC_001806.1 + 33817 0.66 0.849363
Target:  5'- gGGUGGAcucgcgGGGGGCCGgagGGugGAa- -3'
miRNA:   3'- aCCAUCU------CCUCCGGCaggCCugCUag -5'
6001 5' -58.1 NC_001806.1 + 34309 0.68 0.724975
Target:  5'- cGGcGGGGGGcGGCgCG-CCGGACGGg- -3'
miRNA:   3'- aCCaUCUCCU-CCG-GCaGGCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 34405 0.66 0.825149
Target:  5'- cGGUGGccGGGccGGGCCGggCCGGGcCGGg- -3'
miRNA:   3'- aCCAUC--UCC--UCCGGCa-GGCCU-GCUag -5'
6001 5' -58.1 NC_001806.1 + 41873 0.66 0.833399
Target:  5'- aGGUAGGccuuGGCCGuaucgccaUCCaGGACGGUCu -3'
miRNA:   3'- aCCAUCUccu-CCGGC--------AGG-CCUGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 48598 0.68 0.734641
Target:  5'- cGGUGGguAGGGGGCgCGaCCGGACc--- -3'
miRNA:   3'- aCCAUC--UCCUCCG-GCaGGCCUGcuag -5'
6001 5' -58.1 NC_001806.1 + 63342 0.68 0.715231
Target:  5'- cUGGaucgcuuGGAGGCCGgaUGGACGAUCu -3'
miRNA:   3'- -ACCaucu---CCUCCGGCagGCCUGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 65321 0.7 0.63553
Target:  5'- cGGUGG-GGAcgucGGCCGUCUGGGuacCGGUa -3'
miRNA:   3'- aCCAUCuCCU----CCGGCAGGCCU---GCUAg -5'
6001 5' -58.1 NC_001806.1 + 71926 0.7 0.625473
Target:  5'- uUGGUcGAGGGGGgCGagUGGACGcgCg -3'
miRNA:   3'- -ACCAuCUCCUCCgGCagGCCUGCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.