miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 5' -57.1 NC_001806.1 + 151112 0.67 0.825542
Target:  5'- gGGUCGCGgGGg-GCUccgGCGCCCCc -3'
miRNA:   3'- aCUAGUGCgCCgaCGAca-UGUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 148111 0.68 0.766515
Target:  5'- cGAgC-CGCGGCcgGCUGgggggcugcgugagACGCCCCGc -3'
miRNA:   3'- aCUaGuGCGCCGa-CGACa-------------UGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 135586 0.73 0.503759
Target:  5'- aGGUCGgcCGCGcGCUGCUG-GCGCUCCa -3'
miRNA:   3'- aCUAGU--GCGC-CGACGACaUGUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 132172 0.67 0.79951
Target:  5'- cGA-CGCGCGGCUgGCgUGgGCGCgCCUGg -3'
miRNA:   3'- aCUaGUGCGCCGA-CG-ACaUGUG-GGGC- -5'
6002 5' -57.1 NC_001806.1 + 131210 0.67 0.833882
Target:  5'- gGAccCACa-GGCaGCUGUACGCCCUGc -3'
miRNA:   3'- aCUa-GUGcgCCGaCGACAUGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 130450 0.67 0.808348
Target:  5'- cGAUCuACGgGaGCUGCgGUGCcgggAUCCCGa -3'
miRNA:   3'- aCUAG-UGCgC-CGACGaCAUG----UGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 124766 0.73 0.484683
Target:  5'- gGGUUA-GCGGUUGacCUGUACGCCCUGg -3'
miRNA:   3'- aCUAGUgCGCCGAC--GACAUGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 123665 0.66 0.872722
Target:  5'- cUGGUCAUGUGGCaGCUaaccucaGCCCCc -3'
miRNA:   3'- -ACUAGUGCGCCGaCGAcaug---UGGGGc -5'
6002 5' -57.1 NC_001806.1 + 121552 0.7 0.64377
Target:  5'- gGAUCACcaaccacccggGgGGCUGCgaguccUGCGCCCCGc -3'
miRNA:   3'- aCUAGUG-----------CgCCGACGac----AUGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 116992 0.71 0.572771
Target:  5'- uUGAcgGCGCGGCcGUUGUGCGgUCCGg -3'
miRNA:   3'- -ACUagUGCGCCGaCGACAUGUgGGGC- -5'
6002 5' -57.1 NC_001806.1 + 114079 0.7 0.664088
Target:  5'- --cUCGCGgGGCcGCUGcUGCACCgCGg -3'
miRNA:   3'- acuAGUGCgCCGaCGAC-AUGUGGgGC- -5'
6002 5' -57.1 NC_001806.1 + 108643 0.69 0.704348
Target:  5'- cGGUgUGCGUGGCUGCggacaUGCGCCCgCGg -3'
miRNA:   3'- aCUA-GUGCGCCGACGac---AUGUGGG-GC- -5'
6002 5' -57.1 NC_001806.1 + 105335 0.67 0.798618
Target:  5'- gGAUUACGaccaaucgcccgcCGGCUGCcGggACGCCCUGc -3'
miRNA:   3'- aCUAGUGC-------------GCCGACGaCa-UGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 103932 0.66 0.865357
Target:  5'- gGGUCACGCGGCUGaCgcgGaGCGUCCg- -3'
miRNA:   3'- aCUAGUGCGCCGAC-Ga--CaUGUGGGgc -5'
6002 5' -57.1 NC_001806.1 + 98760 0.74 0.420876
Target:  5'- -cGUCAUGCGGCUGCaGaGCaACCCCa -3'
miRNA:   3'- acUAGUGCGCCGACGaCaUG-UGGGGc -5'
6002 5' -57.1 NC_001806.1 + 92305 0.68 0.762747
Target:  5'- cGGUCGCGCucucggagggGGCgGCUaucUGCGCCCCc -3'
miRNA:   3'- aCUAGUGCG----------CCGaCGAc--AUGUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 89515 0.76 0.331626
Target:  5'- gGAUCcggGCgGCGaGCUGCUGcgcgGCGCCCCGg -3'
miRNA:   3'- aCUAG---UG-CGC-CGACGACa---UGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 89059 0.66 0.865357
Target:  5'- gGggCGCGCuugaGGUgaccGUcGUGCACCCCGg -3'
miRNA:   3'- aCuaGUGCG----CCGa---CGaCAUGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 85391 0.68 0.752292
Target:  5'- cGAcC-CGCGGCUGUUGUuuuacccGgACCCCa -3'
miRNA:   3'- aCUaGuGCGCCGACGACA-------UgUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 83912 0.68 0.743642
Target:  5'- gGGUCgGCGCGggggcggggacaGCUGCUGUacucGCGCCgCCGc -3'
miRNA:   3'- aCUAG-UGCGC------------CGACGACA----UGUGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.