miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 5' -57.1 NC_001806.1 + 2085 0.67 0.808348
Target:  5'- cGGUCGC-CGGC-GCUGgcgaGCAgCCCCa -3'
miRNA:   3'- aCUAGUGcGCCGaCGACa---UGU-GGGGc -5'
6002 5' -57.1 NC_001806.1 + 3125 0.66 0.865357
Target:  5'- gGGUCcCGCGGCaGCgcgGgGCccaggGCCCCGg -3'
miRNA:   3'- aCUAGuGCGCCGaCGa--CaUG-----UGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 3459 0.66 0.879874
Target:  5'- cGGcCACGCGGCcgGcCUGggcgcgGCGCCCgGc -3'
miRNA:   3'- aCUaGUGCGCCGa-C-GACa-----UGUGGGgC- -5'
6002 5' -57.1 NC_001806.1 + 4756 0.67 0.807471
Target:  5'- cGGUCgccggcgGCGuCGGCUGCgucgucGUACucguCCCCGu -3'
miRNA:   3'- aCUAG-------UGC-GCCGACGa-----CAUGu---GGGGC- -5'
6002 5' -57.1 NC_001806.1 + 7824 0.67 0.825542
Target:  5'- ---aCGCGCGGCUGgUccACACCCa- -3'
miRNA:   3'- acuaGUGCGCCGACgAcaUGUGGGgc -5'
6002 5' -57.1 NC_001806.1 + 16388 0.74 0.437702
Target:  5'- -aAUCugGaUGGCUGCUGUcaaagacACACCCCu -3'
miRNA:   3'- acUAGugC-GCCGACGACA-------UGUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 20806 0.66 0.865357
Target:  5'- cGAUCguccacacggaGCGCGGCUGCcg-ACACggauccacgaCCCGa -3'
miRNA:   3'- aCUAG-----------UGCGCCGACGacaUGUG----------GGGC- -5'
6002 5' -57.1 NC_001806.1 + 22234 1.09 0.002097
Target:  5'- cUGAUCACGCGGCUGCUGUACACCCCGg -3'
miRNA:   3'- -ACUAGUGCGCCGACGACAUGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 23968 0.7 0.64377
Target:  5'- gUGGUCcgccgaGCGCGGCggGCUGUcCugCCUGc -3'
miRNA:   3'- -ACUAG------UGCGCCGa-CGACAuGugGGGC- -5'
6002 5' -57.1 NC_001806.1 + 26901 0.66 0.872722
Target:  5'- ---cCGCGCGGgUGCgcuucuCGCCCCa -3'
miRNA:   3'- acuaGUGCGCCgACGacau--GUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 35879 0.66 0.879874
Target:  5'- cGG-CGCGCGGCUcGuCUGaucAUGCCCCa -3'
miRNA:   3'- aCUaGUGCGCCGA-C-GACa--UGUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 40121 0.73 0.475275
Target:  5'- gGA-CACGCacaGGCgGUUGUugGCCCCGa -3'
miRNA:   3'- aCUaGUGCG---CCGaCGACAugUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 43300 0.66 0.872722
Target:  5'- gGAgC-CGCGGCUGCaGgAgGCCCUGg -3'
miRNA:   3'- aCUaGuGCGCCGACGaCaUgUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 50900 0.67 0.825542
Target:  5'- ---cCGCGCGGCcGCgGagcacguggaucUGCGCCCCGc -3'
miRNA:   3'- acuaGUGCGCCGaCGaC------------AUGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 51750 0.7 0.653937
Target:  5'- ---cCugGCGccaaaGCUGCUGgcgcGCACCCCGu -3'
miRNA:   3'- acuaGugCGC-----CGACGACa---UGUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 55723 0.67 0.79951
Target:  5'- cGggCugGCGGCUGacccgggGgACCCCGa -3'
miRNA:   3'- aCuaGugCGCCGACgaca---UgUGGGGC- -5'
6002 5' -57.1 NC_001806.1 + 60673 0.68 0.743642
Target:  5'- cGAaCGCGCaGCUGCUGgaagaGCACCgCa -3'
miRNA:   3'- aCUaGUGCGcCGACGACa----UGUGGgGc -5'
6002 5' -57.1 NC_001806.1 + 63799 0.67 0.825542
Target:  5'- cGGUCggACGCGcGCucucuuUGUUGUGCGCCgCCa -3'
miRNA:   3'- aCUAG--UGCGC-CG------ACGACAUGUGG-GGc -5'
6002 5' -57.1 NC_001806.1 + 74333 0.69 0.733941
Target:  5'- cUGAUCcaGCGgGGCcagacGCUGgACGCCCCc -3'
miRNA:   3'- -ACUAG--UGCgCCGa----CGACaUGUGGGGc -5'
6002 5' -57.1 NC_001806.1 + 76997 0.67 0.797724
Target:  5'- gGAuuUCGCGCGGCaUGCgagcagcuucGCGCCCUGc -3'
miRNA:   3'- aCU--AGUGCGCCG-ACGaca-------UGUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.