Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 78258 | 0.67 | 0.833882 |
Target: 5'- cGG-CACGCGGCUGgcagaCUG-GCGCCgCGg -3' miRNA: 3'- aCUaGUGCGCCGAC-----GACaUGUGGgGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 79535 | 0.7 | 0.674212 |
Target: 5'- cGAaagCACGCGGCcgGCgcccGUGgGCCCCc -3' miRNA: 3'- aCUa--GUGCGCCGa-CGa---CAUgUGGGGc -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 79674 | 0.67 | 0.808348 |
Target: 5'- gGGUCGCGCGcGC-GCcg-ACACCgCCGg -3' miRNA: 3'- aCUAGUGCGC-CGaCGacaUGUGG-GGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 83912 | 0.68 | 0.743642 |
Target: 5'- gGGUCgGCGCGggggcggggacaGCUGCUGUacucGCGCCgCCGc -3' miRNA: 3'- aCUAG-UGCGC------------CGACGACA----UGUGG-GGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 85391 | 0.68 | 0.752292 |
Target: 5'- cGAcC-CGCGGCUGUUGUuuuacccGgACCCCa -3' miRNA: 3'- aCUaGuGCGCCGACGACA-------UgUGGGGc -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 89059 | 0.66 | 0.865357 |
Target: 5'- gGggCGCGCuugaGGUgaccGUcGUGCACCCCGg -3' miRNA: 3'- aCuaGUGCG----CCGa---CGaCAUGUGGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 89515 | 0.76 | 0.331626 |
Target: 5'- gGAUCcggGCgGCGaGCUGCUGcgcgGCGCCCCGg -3' miRNA: 3'- aCUAG---UG-CGC-CGACGACa---UGUGGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 92305 | 0.68 | 0.762747 |
Target: 5'- cGGUCGCGCucucggagggGGCgGCUaucUGCGCCCCc -3' miRNA: 3'- aCUAGUGCG----------CCGaCGAc--AUGUGGGGc -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 98760 | 0.74 | 0.420876 |
Target: 5'- -cGUCAUGCGGCUGCaGaGCaACCCCa -3' miRNA: 3'- acUAGUGCGCCGACGaCaUG-UGGGGc -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 103932 | 0.66 | 0.865357 |
Target: 5'- gGGUCACGCGGCUGaCgcgGaGCGUCCg- -3' miRNA: 3'- aCUAGUGCGCCGAC-Ga--CaUGUGGGgc -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 105335 | 0.67 | 0.798618 |
Target: 5'- gGAUUACGaccaaucgcccgcCGGCUGCcGggACGCCCUGc -3' miRNA: 3'- aCUAGUGC-------------GCCGACGaCa-UGUGGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 108643 | 0.69 | 0.704348 |
Target: 5'- cGGUgUGCGUGGCUGCggacaUGCGCCCgCGg -3' miRNA: 3'- aCUA-GUGCGCCGACGac---AUGUGGG-GC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 114079 | 0.7 | 0.664088 |
Target: 5'- --cUCGCGgGGCcGCUGcUGCACCgCGg -3' miRNA: 3'- acuAGUGCgCCGaCGAC-AUGUGGgGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 116992 | 0.71 | 0.572771 |
Target: 5'- uUGAcgGCGCGGCcGUUGUGCGgUCCGg -3' miRNA: 3'- -ACUagUGCGCCGaCGACAUGUgGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 121552 | 0.7 | 0.64377 |
Target: 5'- gGAUCACcaaccacccggGgGGCUGCgaguccUGCGCCCCGc -3' miRNA: 3'- aCUAGUG-----------CgCCGACGac----AUGUGGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 123665 | 0.66 | 0.872722 |
Target: 5'- cUGGUCAUGUGGCaGCUaaccucaGCCCCc -3' miRNA: 3'- -ACUAGUGCGCCGaCGAcaug---UGGGGc -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 124766 | 0.73 | 0.484683 |
Target: 5'- gGGUUA-GCGGUUGacCUGUACGCCCUGg -3' miRNA: 3'- aCUAGUgCGCCGAC--GACAUGUGGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 130450 | 0.67 | 0.808348 |
Target: 5'- cGAUCuACGgGaGCUGCgGUGCcgggAUCCCGa -3' miRNA: 3'- aCUAG-UGCgC-CGACGaCAUG----UGGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 131210 | 0.67 | 0.833882 |
Target: 5'- gGAccCACa-GGCaGCUGUACGCCCUGc -3' miRNA: 3'- aCUa-GUGcgCCGaCGACAUGUGGGGC- -5' |
|||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 132172 | 0.67 | 0.79951 |
Target: 5'- cGA-CGCGCGGCUgGCgUGgGCGCgCCUGg -3' miRNA: 3'- aCUaGUGCGCCGA-CG-ACaUGUG-GGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home