Results 41 - 43 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 98760 | 0.74 | 0.420876 |
Target: 5'- -cGUCAUGCGGCUGCaGaGCaACCCCa -3' miRNA: 3'- acUAGUGCGCCGACGaCaUG-UGGGGc -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 89515 | 0.76 | 0.331626 |
Target: 5'- gGAUCcggGCgGCGaGCUGCUGcgcgGCGCCCCGg -3' miRNA: 3'- aCUAG---UG-CGC-CGACGACa---UGUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 22234 | 1.09 | 0.002097 |
Target: 5'- cUGAUCACGCGGCUGCUGUACACCCCGg -3' miRNA: 3'- -ACUAGUGCGCCGACGACAUGUGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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