Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6002 | 5' | -57.1 | NC_001806.1 | + | 55723 | 0.67 | 0.79951 |
Target: 5'- cGggCugGCGGCUGacccgggGgACCCCGa -3' miRNA: 3'- aCuaGugCGCCGACgaca---UgUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 105335 | 0.67 | 0.798618 |
Target: 5'- gGAUUACGaccaaucgcccgcCGGCUGCcGggACGCCCUGc -3' miRNA: 3'- aCUAGUGC-------------GCCGACGaCa-UGUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 76997 | 0.67 | 0.797724 |
Target: 5'- gGAuuUCGCGCGGCaUGCgagcagcuucGCGCCCUGc -3' miRNA: 3'- aCU--AGUGCGCCG-ACGaca-------UGUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 148111 | 0.68 | 0.766515 |
Target: 5'- cGAgC-CGCGGCcgGCUGgggggcugcgugagACGCCCCGc -3' miRNA: 3'- aCUaGuGCGCCGa-CGACa-------------UGUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 92305 | 0.68 | 0.762747 |
Target: 5'- cGGUCGCGCucucggagggGGCgGCUaucUGCGCCCCc -3' miRNA: 3'- aCUAGUGCG----------CCGaCGAc--AUGUGGGGc -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 85391 | 0.68 | 0.752292 |
Target: 5'- cGAcC-CGCGGCUGUUGUuuuacccGgACCCCa -3' miRNA: 3'- aCUaGuGCGCCGACGACA-------UgUGGGGc -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 60673 | 0.68 | 0.743642 |
Target: 5'- cGAaCGCGCaGCUGCUGgaagaGCACCgCa -3' miRNA: 3'- aCUaGUGCGcCGACGACa----UGUGGgGc -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 83912 | 0.68 | 0.743642 |
Target: 5'- gGGUCgGCGCGggggcggggacaGCUGCUGUacucGCGCCgCCGc -3' miRNA: 3'- aCUAG-UGCGC------------CGACGACA----UGUGG-GGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 74333 | 0.69 | 0.733941 |
Target: 5'- cUGAUCcaGCGgGGCcagacGCUGgACGCCCCc -3' miRNA: 3'- -ACUAG--UGCgCCGa----CGACaUGUGGGGc -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 108643 | 0.69 | 0.704348 |
Target: 5'- cGGUgUGCGUGGCUGCggacaUGCGCCCgCGg -3' miRNA: 3'- aCUA-GUGCGCCGACGac---AUGUGGG-GC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 79535 | 0.7 | 0.674212 |
Target: 5'- cGAaagCACGCGGCcgGCgcccGUGgGCCCCc -3' miRNA: 3'- aCUa--GUGCGCCGa-CGa---CAUgUGGGGc -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 114079 | 0.7 | 0.664088 |
Target: 5'- --cUCGCGgGGCcGCUGcUGCACCgCGg -3' miRNA: 3'- acuAGUGCgCCGaCGAC-AUGUGGgGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 51750 | 0.7 | 0.653937 |
Target: 5'- ---cCugGCGccaaaGCUGCUGgcgcGCACCCCGu -3' miRNA: 3'- acuaGugCGC-----CGACGACa---UGUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 121552 | 0.7 | 0.64377 |
Target: 5'- gGAUCACcaaccacccggGgGGCUGCgaguccUGCGCCCCGc -3' miRNA: 3'- aCUAGUG-----------CgCCGACGac----AUGUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 23968 | 0.7 | 0.64377 |
Target: 5'- gUGGUCcgccgaGCGCGGCggGCUGUcCugCCUGc -3' miRNA: 3'- -ACUAG------UGCGCCGa-CGACAuGugGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 116992 | 0.71 | 0.572771 |
Target: 5'- uUGAcgGCGCGGCcGUUGUGCGgUCCGg -3' miRNA: 3'- -ACUagUGCGCCGaCGACAUGUgGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 135586 | 0.73 | 0.503759 |
Target: 5'- aGGUCGgcCGCGcGCUGCUG-GCGCUCCa -3' miRNA: 3'- aCUAGU--GCGC-CGACGACaUGUGGGGc -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 124766 | 0.73 | 0.484683 |
Target: 5'- gGGUUA-GCGGUUGacCUGUACGCCCUGg -3' miRNA: 3'- aCUAGUgCGCCGAC--GACAUGUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 40121 | 0.73 | 0.475275 |
Target: 5'- gGA-CACGCacaGGCgGUUGUugGCCCCGa -3' miRNA: 3'- aCUaGUGCG---CCGaCGACAugUGGGGC- -5' |
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6002 | 5' | -57.1 | NC_001806.1 | + | 16388 | 0.74 | 0.437702 |
Target: 5'- -aAUCugGaUGGCUGCUGUcaaagacACACCCCu -3' miRNA: 3'- acUAGugC-GCCGACGACA-------UGUGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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