miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6003 5' -54.7 NC_001806.1 + 25481 1.11 0.003057
Target:  5'- gCACUGAGGUAGAGAUGCCCGAACCCCc -3'
miRNA:   3'- -GUGACUCCAUCUCUACGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 15187 0.79 0.306894
Target:  5'- gACUGGGGUAG-GGUGUCaCGggUCCCa -3'
miRNA:   3'- gUGACUCCAUCuCUACGG-GCuuGGGG- -5'
6003 5' -54.7 NC_001806.1 + 74981 0.75 0.521879
Target:  5'- uGCUGGGGcaguaccGAGAUGCCCugGAGCaCCCg -3'
miRNA:   3'- gUGACUCCau-----CUCUACGGG--CUUG-GGG- -5'
6003 5' -54.7 NC_001806.1 + 5768 0.74 0.541762
Target:  5'- gGCaGGGGgcGGG--GCCCGGGCCCCg -3'
miRNA:   3'- gUGaCUCCauCUCuaCGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 27060 0.74 0.572033
Target:  5'- -cCUGGGGcccGAGGcccgUGCCCGGGCCCUg -3'
miRNA:   3'- guGACUCCau-CUCU----ACGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 140224 0.74 0.589369
Target:  5'- -cCUGcuGGUAGAGGUGCugcgggagauucaaCUGAGCCCCg -3'
miRNA:   3'- guGACu-CCAUCUCUACG--------------GGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 2808 0.73 0.612962
Target:  5'- gGCUG-GGcGGGGGcggGCUCGGGCCCCg -3'
miRNA:   3'- gUGACuCCaUCUCUa--CGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 51592 0.72 0.664384
Target:  5'- gCGCUgggcGAGGUGGAGcUGCCCGGcgGCCa- -3'
miRNA:   3'- -GUGA----CUCCAUCUCuACGGGCU--UGGgg -5'
6003 5' -54.7 NC_001806.1 + 26826 0.72 0.705095
Target:  5'- gCGCgggcGGGGaGGGGgcGCCgGAGCCCCc -3'
miRNA:   3'- -GUGa---CUCCaUCUCuaCGGgCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 109358 0.72 0.705095
Target:  5'- uCGCUGAcGGUGGcccgcuuGgcGCCCGcGCCCCc -3'
miRNA:   3'- -GUGACU-CCAUCu------CuaCGGGCuUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 8056 0.71 0.725112
Target:  5'- -uUUGGGuGUGGGGAcccgGCCCuAACCCCa -3'
miRNA:   3'- guGACUC-CAUCUCUa---CGGGcUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 100396 0.71 0.725112
Target:  5'- gCGCgGGGGccGGGGUGCCCGAugUCg -3'
miRNA:   3'- -GUGaCUCCauCUCUACGGGCUugGGg -5'
6003 5' -54.7 NC_001806.1 + 100612 0.71 0.735004
Target:  5'- uCGCcugGAGGUAGGuGUGUCCGGcgAUCCCg -3'
miRNA:   3'- -GUGa--CUCCAUCUcUACGGGCU--UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 117672 0.7 0.7641
Target:  5'- uCGCaGuGGUAGAagagaagcucGggGCCCGAGCCCg -3'
miRNA:   3'- -GUGaCuCCAUCU----------CuaCGGGCUUGGGg -5'
6003 5' -54.7 NC_001806.1 + 147404 0.7 0.772632
Target:  5'- gACUGGGGggAGGGGUuuuccugGCCCG-ACCCg -3'
miRNA:   3'- gUGACUCCa-UCUCUA-------CGGGCuUGGGg -5'
6003 5' -54.7 NC_001806.1 + 91271 0.7 0.773574
Target:  5'- uCACcGAGGUGGAcGAcgccgGCCCGGcggACCCa -3'
miRNA:   3'- -GUGaCUCCAUCU-CUa----CGGGCU---UGGGg -5'
6003 5' -54.7 NC_001806.1 + 82412 0.7 0.78292
Target:  5'- gGCUgGAGGgAGAGuagggGCCCGccuCCCCg -3'
miRNA:   3'- gUGA-CUCCaUCUCua---CGGGCuu-GGGG- -5'
6003 5' -54.7 NC_001806.1 + 56675 0.69 0.818846
Target:  5'- -gUUGGGGggucgGGGGGgacggggGCCCGGgaACCCCg -3'
miRNA:   3'- guGACUCCa----UCUCUa------CGGGCU--UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 57029 0.69 0.82657
Target:  5'- gCACUG-GGUGGccggGCCCGGggccgggGCCCCc -3'
miRNA:   3'- -GUGACuCCAUCucuaCGGGCU-------UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 5670 0.69 0.827419
Target:  5'- gCGC-GAGGgcGGGuggGUCCGcGCCCCg -3'
miRNA:   3'- -GUGaCUCCauCUCua-CGGGCuUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.