miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6003 5' -54.7 NC_001806.1 + 2808 0.73 0.612962
Target:  5'- gGCUG-GGcGGGGGcggGCUCGGGCCCCg -3'
miRNA:   3'- gUGACuCCaUCUCUa--CGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 3346 0.67 0.90214
Target:  5'- cCGCgGGGGgcuGGcgGgCCGGGCCCCg -3'
miRNA:   3'- -GUGaCUCCaucUCuaCgGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 5083 0.66 0.935524
Target:  5'- gGCUcGGGGUGGgcGGcgGCCCGucgguggGGCCCg -3'
miRNA:   3'- gUGA-CUCCAUC--UCuaCGGGC-------UUGGGg -5'
6003 5' -54.7 NC_001806.1 + 5234 0.66 0.940819
Target:  5'- gGgaGGGGgcGAGAc-CCaCGGACCCCg -3'
miRNA:   3'- gUgaCUCCauCUCUacGG-GCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 5670 0.69 0.827419
Target:  5'- gCGC-GAGGgcGGGuggGUCCGcGCCCCg -3'
miRNA:   3'- -GUGaCUCCauCUCua-CGGGCuUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 5768 0.74 0.541762
Target:  5'- gGCaGGGGgcGGG--GCCCGGGCCCCg -3'
miRNA:   3'- gUGaCUCCauCUCuaCGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 8056 0.71 0.725112
Target:  5'- -uUUGGGuGUGGGGAcccgGCCCuAACCCCa -3'
miRNA:   3'- guGACUC-CAUCUCUa---CGGGcUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 15187 0.79 0.306894
Target:  5'- gACUGGGGUAG-GGUGUCaCGggUCCCa -3'
miRNA:   3'- gUGACUCCAUCuCUACGG-GCuuGGGG- -5'
6003 5' -54.7 NC_001806.1 + 16617 0.67 0.90214
Target:  5'- aCACgGGGG-AGGGAUGUggUCGuugGCCCCg -3'
miRNA:   3'- -GUGaCUCCaUCUCUACG--GGCu--UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 18957 0.66 0.949708
Target:  5'- gCACUGc-GUGGGGGU-CCCGGGCgaCCCg -3'
miRNA:   3'- -GUGACucCAUCUCUAcGGGCUUG--GGG- -5'
6003 5' -54.7 NC_001806.1 + 24894 0.67 0.914395
Target:  5'- uGCUGGGGgcGGAGGcggGCuuGGccacGCCCCc -3'
miRNA:   3'- gUGACUCCa-UCUCUa--CGggCU----UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 25416 0.66 0.945382
Target:  5'- gGCgaggGGcGGUGGuGGUGCgCGGgcGCCCCc -3'
miRNA:   3'- gUGa---CU-CCAUCuCUACGgGCU--UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 25481 1.11 0.003057
Target:  5'- gCACUGAGGUAGAGAUGCCCGAACCCCc -3'
miRNA:   3'- -GUGACUCCAUCUCUACGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 26169 0.66 0.930975
Target:  5'- aGCggGGGGaGGAGcgGCCagacgccgaaaaCGGGCCCCc -3'
miRNA:   3'- gUGa-CUCCaUCUCuaCGG------------GCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 26826 0.72 0.705095
Target:  5'- gCGCgggcGGGGaGGGGgcGCCgGAGCCCCc -3'
miRNA:   3'- -GUGa---CUCCaUCUCuaCGGgCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 27060 0.74 0.572033
Target:  5'- -cCUGGGGcccGAGGcccgUGCCCGGGCCCUg -3'
miRNA:   3'- guGACUCCau-CUCU----ACGGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 29609 0.68 0.888943
Target:  5'- aCGgUGAGGcggGGGGcgGCaaGGACCCUg -3'
miRNA:   3'- -GUgACUCCa--UCUCuaCGggCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 30027 0.68 0.895658
Target:  5'- aGCgGAGGcGGGGcgGCCgaggggccggaCGGGCCCCc -3'
miRNA:   3'- gUGaCUCCaUCUCuaCGG-----------GCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 46138 0.69 0.85518
Target:  5'- cCGCUG-GGUccGGAGggGCCgGAcgcacacccaccaccGCCCCc -3'
miRNA:   3'- -GUGACuCCA--UCUCuaCGGgCU---------------UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 51592 0.72 0.664384
Target:  5'- gCGCUgggcGAGGUGGAGcUGCCCGGcgGCCa- -3'
miRNA:   3'- -GUGA----CUCCAUCUCuACGGGCU--UGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.