Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6003 | 5' | -54.7 | NC_001806.1 | + | 147404 | 0.7 | 0.772632 |
Target: 5'- gACUGGGGggAGGGGUuuuccugGCCCG-ACCCg -3' miRNA: 3'- gUGACUCCa-UCUCUA-------CGGGCuUGGGg -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 147285 | 0.67 | 0.908387 |
Target: 5'- cCGCcGAGGacgucagGGGGGU-CCCGGGCCCa -3' miRNA: 3'- -GUGaCUCCa------UCUCUAcGGGCUUGGGg -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 140224 | 0.74 | 0.589369 |
Target: 5'- -cCUGcuGGUAGAGGUGCugcgggagauucaaCUGAGCCCCg -3' miRNA: 3'- guGACu-CCAUCUCUACG--------------GGCUUGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 138838 | 0.66 | 0.940819 |
Target: 5'- aACUGGGGccgcgGGAcgGggGCCCGGACgauuuuCCCg -3' miRNA: 3'- gUGACUCCa----UCU--CuaCGGGCUUG------GGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 117672 | 0.7 | 0.7641 |
Target: 5'- uCGCaGuGGUAGAagagaagcucGggGCCCGAGCCCg -3' miRNA: 3'- -GUGaCuCCAUCU----------CuaCGGGCUUGGGg -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 117064 | 0.67 | 0.914395 |
Target: 5'- cCACgggGGGGUGGGGGUGggcauCCagggaGAaACCCCa -3' miRNA: 3'- -GUGa--CUCCAUCUCUAC-----GGg----CU-UGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 113413 | 0.66 | 0.949708 |
Target: 5'- aGCUGGGGguGGGAcGCCaCGccauGGCCCCc -3' miRNA: 3'- gUGACUCCauCUCUaCGG-GC----UUGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 109358 | 0.72 | 0.705095 |
Target: 5'- uCGCUGAcGGUGGcccgcuuGgcGCCCGcGCCCCc -3' miRNA: 3'- -GUGACU-CCAUCu------CuaCGGGCuUGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 100612 | 0.71 | 0.735004 |
Target: 5'- uCGCcugGAGGUAGGuGUGUCCGGcgAUCCCg -3' miRNA: 3'- -GUGa--CUCCAUCUcUACGGGCU--UGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 100396 | 0.71 | 0.725112 |
Target: 5'- gCGCgGGGGccGGGGUGCCCGAugUCg -3' miRNA: 3'- -GUGaCUCCauCUCUACGGGCUugGGg -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 91271 | 0.7 | 0.773574 |
Target: 5'- uCACcGAGGUGGAcGAcgccgGCCCGGcggACCCa -3' miRNA: 3'- -GUGaCUCCAUCU-CUa----CGGGCU---UGGGg -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 90677 | 0.66 | 0.940819 |
Target: 5'- gGC-GGGGcGGAGGUGCaCCGcauACCCg -3' miRNA: 3'- gUGaCUCCaUCUCUACG-GGCu--UGGGg -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 89436 | 0.69 | 0.835813 |
Target: 5'- cCGCUuGGGUGG-GAUGgcaaaauuaCCGGACCCCc -3' miRNA: 3'- -GUGAcUCCAUCuCUACg--------GGCUUGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 82412 | 0.7 | 0.78292 |
Target: 5'- gGCUgGAGGgAGAGuagggGCCCGccuCCCCg -3' miRNA: 3'- gUGA-CUCCaUCUCua---CGGGCuu-GGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 79266 | 0.65 | 0.9534 |
Target: 5'- -gUUGGGGcGGAGGgcucguugggGCCCGGaagccugGCCCCc -3' miRNA: 3'- guGACUCCaUCUCUa---------CGGGCU-------UGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 74981 | 0.75 | 0.521879 |
Target: 5'- uGCUGGGGcaguaccGAGAUGCCCugGAGCaCCCg -3' miRNA: 3'- gUGACUCCau-----CUCUACGGG--CUUG-GGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 72552 | 0.69 | 0.835813 |
Target: 5'- ---gGGGGUAGGGG-GCCCGGGgCCa -3' miRNA: 3'- gugaCUCCAUCUCUaCGGGCUUgGGg -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 65439 | 0.67 | 0.920163 |
Target: 5'- aACgaAGGgagcgGGGGAUGCCgCGGcCCCCg -3' miRNA: 3'- gUGacUCCa----UCUCUACGG-GCUuGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 65288 | 0.67 | 0.914395 |
Target: 5'- aGCgggGAGGaGGAGGgggGCCCccaaGGGCCUCg -3' miRNA: 3'- gUGa--CUCCaUCUCUa--CGGG----CUUGGGG- -5' |
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6003 | 5' | -54.7 | NC_001806.1 | + | 60133 | 0.67 | 0.920163 |
Target: 5'- aGCUgGAGGcGGAcGAUGCCUGcgccAACCUCu -3' miRNA: 3'- gUGA-CUCCaUCU-CUACGGGC----UUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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