Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
607 | 3' | -64.1 | AC_000017.1 | + | 16067 | 0.71 | 0.085033 |
Target: 5'- --cGGCCGcguuuGUGCGC-GCCCcaGGGGCGCg -3' miRNA: 3'- ggaCCGGU-----CGCGCGuCGGG--CCUCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 5485 | 0.79 | 0.022367 |
Target: 5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3' miRNA: 3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 25543 | 0.8 | 0.017761 |
Target: 5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3' miRNA: 3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 5419 | 1.12 | 0.000043 |
Target: 5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3' miRNA: 3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 8718 | 0.67 | 0.18676 |
Target: 5'- uCCU-GCCcGCGCGCGGCgCCGacGUGCc -3' miRNA: 3'- -GGAcCGGuCGCGCGUCG-GGCcuCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 12230 | 0.67 | 0.180492 |
Target: 5'- uCC-GGCCccagcugccuccagGGCGCGuCGGCuuGGggcccAGCGCa -3' miRNA: 3'- -GGaCCGG--------------UCGCGC-GUCGggCC-----UCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 22795 | 0.77 | 0.031032 |
Target: 5'- gCUGGCCAGCGUGCAucaCCCGGcgcugauaguguuccAGUGCu -3' miRNA: 3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 18999 | 0.66 | 0.232028 |
Target: 5'- --aGGCUgaaguacgucucgguGGCGCGggcgaacugcacCAGCCCGGGGCu- -3' miRNA: 3'- ggaCCGG---------------UCGCGC------------GUCGGGCCUCGcg -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 5684 | 0.66 | 0.205658 |
Target: 5'- aCCUGGCUcguGGaaugcgagaccgucUGCGgGGCCUGcGGCGCg -3' miRNA: 3'- -GGACCGG---UC--------------GCGCgUCGGGCcUCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 11542 | 0.68 | 0.150665 |
Target: 5'- --cGGCCGccacgugugcGCGCGCGGgacuaauCCCGGuccGCGCg -3' miRNA: 3'- ggaCCGGU----------CGCGCGUC-------GGGCCu--CGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 22666 | 0.69 | 0.121685 |
Target: 5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3' miRNA: 3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 6474 | 0.69 | 0.132024 |
Target: 5'- aCCgcGGUUGGCGCGUgcaccugguGCCCGacGAGCGCa -3' miRNA: 3'- -GGa-CCGGUCGCGCGu--------CGGGC--CUCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 26542 | 0.66 | 0.20726 |
Target: 5'- --gGGUCGGCGaacggGCAGUgCCGGcGGCGCc -3' miRNA: 3'- ggaCCGGUCGCg----CGUCG-GGCC-UCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 16435 | 0.71 | 0.087432 |
Target: 5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3' miRNA: 3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 12652 | 0.69 | 0.121353 |
Target: 5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3' miRNA: 3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 23847 | 0.66 | 0.212681 |
Target: 5'- -aUGGCCGcgggcuggguGUGCGCGGCaCC--AGCGCg -3' miRNA: 3'- ggACCGGU----------CGCGCGUCG-GGccUCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 16353 | 0.66 | 0.20726 |
Target: 5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3' miRNA: 3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 7218 | 0.66 | 0.20726 |
Target: 5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3' miRNA: 3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 23252 | 0.67 | 0.196777 |
Target: 5'- ---aGCCAcaaCGCGCAGCCCGuGGGCu- -3' miRNA: 3'- ggacCGGUc--GCGCGUCGGGC-CUCGcg -5' |
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607 | 3' | -64.1 | AC_000017.1 | + | 10375 | 0.69 | 0.125045 |
Target: 5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3' miRNA: 3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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