miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
607 3' -64.1 AC_000017.1 + 11245 0.73 0.066098
Target:  5'- --gGGCCuG-GCGCGGCuaGGAGCGCc -3'
miRNA:   3'- ggaCCGGuCgCGCGUCGggCCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 4626 0.66 0.223887
Target:  5'- --gGGCCcacgGGCG-GCGGCCUGG-GCGa -3'
miRNA:   3'- ggaCCGG----UCGCgCGUCGGGCCuCGCg -5'
607 3' -64.1 AC_000017.1 + 810 0.66 0.218223
Target:  5'- ---cGCCGGCGCcCGGUucuCCGGAGcCGCc -3'
miRNA:   3'- ggacCGGUCGCGcGUCG---GGCCUC-GCG- -5'
607 3' -64.1 AC_000017.1 + 23847 0.66 0.212681
Target:  5'- -aUGGCCGcgggcuggguGUGCGCGGCaCC--AGCGCg -3'
miRNA:   3'- ggACCGGU----------CGCGCGUCG-GGccUCGCG- -5'
607 3' -64.1 AC_000017.1 + 16353 0.66 0.20726
Target:  5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3'
miRNA:   3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5'
607 3' -64.1 AC_000017.1 + 7218 0.66 0.20726
Target:  5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3'
miRNA:   3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5'
607 3' -64.1 AC_000017.1 + 23252 0.67 0.196777
Target:  5'- ---aGCCAcaaCGCGCAGCCCGuGGGCu- -3'
miRNA:   3'- ggacCGGUc--GCGCGUCGGGC-CUCGcg -5'
607 3' -64.1 AC_000017.1 + 15992 0.67 0.18676
Target:  5'- --gGGCacuacCGCGC-GCCCuGGGGCGCg -3'
miRNA:   3'- ggaCCGguc--GCGCGuCGGG-CCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 16128 0.68 0.15894
Target:  5'- --cGGCCAuucagaccgugguGCGCGgAGCCCGGcGCu- -3'
miRNA:   3'- ggaCCGGU-------------CGCGCgUCGGGCCuCGcg -5'
607 3' -64.1 AC_000017.1 + 25371 0.68 0.156833
Target:  5'- aCCUGGCaaacggccaugGGCGUGUGGCagcagugccuggaGGAGCGCa -3'
miRNA:   3'- -GGACCGg----------UCGCGCGUCGgg-----------CCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 5491 0.72 0.076051
Target:  5'- -aUGGCCcuuGGCGCGCAGCUUgcccuuggaGGAgGCGCc -3'
miRNA:   3'- ggACCGG---UCGCGCGUCGGG---------CCU-CGCG- -5'
607 3' -64.1 AC_000017.1 + 16435 0.71 0.087432
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
607 3' -64.1 AC_000017.1 + 10824 0.7 0.1149
Target:  5'- aCUGGCC-GCGCGCGGCguaagcgguuaggCUGGAaaGCg -3'
miRNA:   3'- gGACCGGuCGCGCGUCG-------------GGCCUcgCG- -5'
607 3' -64.1 AC_000017.1 + 5362 0.7 0.118409
Target:  5'- uCCgGGCU-GCGCGCuGGCCagGGuGCGCu -3'
miRNA:   3'- -GGaCCGGuCGCGCG-UCGGg-CCuCGCG- -5'
607 3' -64.1 AC_000017.1 + 12652 0.69 0.121353
Target:  5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3'
miRNA:   3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5'
607 3' -64.1 AC_000017.1 + 10375 0.69 0.125045
Target:  5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3'
miRNA:   3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5'
607 3' -64.1 AC_000017.1 + 25039 0.68 0.14707
Target:  5'- gCUGGCUugAGaCGCGCgAGCCUgccgacuuggaGGAGCGa -3'
miRNA:   3'- gGACCGG--UC-GCGCG-UCGGG-----------CCUCGCg -5'
607 3' -64.1 AC_000017.1 + 18999 0.66 0.232028
Target:  5'- --aGGCUgaaguacgucucgguGGCGCGggcgaacugcacCAGCCCGGGGCu- -3'
miRNA:   3'- ggaCCGG---------------UCGCGC------------GUCGGGCCUCGcg -5'
607 3' -64.1 AC_000017.1 + 25543 0.8 0.017761
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
607 3' -64.1 AC_000017.1 + 5485 0.79 0.022367
Target:  5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3'
miRNA:   3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.